Nicotiana tomentosiformis: 104085815
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Entry
104085815 CDS
T05025
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104085815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nto03041
]
104085815
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104085815
Spliceosome [BR:
nto03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104085815
Complex C
U5 SnRNP specific factors
104085815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
DUF5358
T2SSE
AAA_11
Motif
Other DBs
NCBI-GeneID:
104085815
NCBI-ProteinID:
XP_070055816
LinkDB
All DBs
Position
4:33942026..33954487
Genome browser
AA seq
2114 aa
AA seq
DB search
MGHLEAQAVYEYGANSPESLYGKIDPKTFGDRAYKGRPDKAARKREPLLVSDWHRQSKKR
RLLESVLTSTEEEGVYQPKTKQTRAAYEALLSLIQQQLGDQPLNIVTAAADEILAVLKND
YFTNPDKKKNQIENLLNSVSNEVFDQLVSIGRLITDYQDDGDAPMDDDVGVAVQFEENEE
EEEESDLDDEEDEDNDVLDADCSSAMPIIADYEMREADDGMSLNVQDVDAYWLQRKISQA
YEPQIDPQQSQKLAEEVLKTLAEGDDREVETKLLLHLQFDKFSLIKYLLRNRLKVVWCTR
LARAEDQSKRKEIEQEMLRLGPDHAAVLEQLHATRATAKERQLHLEKSIREEARHLKDGD
RDNDNAWLMGKHQLLDLDSLAFHQGSLSMANKKCELPVGSYRNHKKGYEEVHVPALKPKP
LAPGEELVKISSFPVWAQPAFSGMTQLNRVQSKVYETALFSPENILLCAPTGAGKTNVAM
LTILQQIALNRNLDGSFNHTNYKIVYVAPMKALVSEVVGNLSKRLEHYGVKVKELSGDQT
LTRQQIEGTQIIVTTPEKWDIITRKSGDRTYMQLVKLVIIDEIHLLHDNRGPVLESIIAR
TIRQIEITKEHIRLVGLSATLPNYQDVALFLRVDLNKGLFHFDNSYRPVPLAQQYIGITV
KKPLQRFQLMNDICYEKVISIAGKHQVLIFVHSRKETTKTAQAIRHAALGNDTLTKFLKE
DGLTREILQSQTELIKSNDLKDLLPYGFAIHHAGLVRTDRQLVEELFADGHVQVLVSTAT
LAWGVNLPAHTVIIKGTKIYNPEKGAWTELSPLDVMQMLGRAGRPQYDTYGEGIIITEHS
ELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTVQNVKEACKWLLYTYLYVRMVQNPT
LYGLAADALETDYALEGRRADLVYSAATLLDKSNLVKYDKRSGYFQVTDLGRIASYYYIT
HGTISAYNEHLKPITGDIELCRLFSLSEEFKYVTVRQDEKIELAKLLDRVPIPIKESLEE
PSAKINVLLQAYISRLKLEGLSLSSDMVYISQSAARLMRALFEIVLKRGWAKLAEKTLKW
CKMISKRMWSVQTPLRQFHDISNEILMKLEKKDLAWERYYDLSSQELGELIRFPKKGRTL
HKCIHQFPKLNLAAHVQPITRSVLRVELTITPDFQWEDAVHGFVEPFWVIVEDNDGEYIL
HHEYFMLKKQYIDKDQTLNFTVPIYEPLPLQYFIRVVSDRWLGSETVLPVSFLHLTLPEK
YLPPTELLDLQPLPVTALRHPAYEALYQDFKHFNPVQTQVFTVLYNSDDNVLVAAPTGSG
KTICAEFAILRNHQKGPDNIGRTVYIAPLEALAKEQFSDWKKKFADSLGIRVVKLIGETA
KDLKLLEKGQLIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPILEVIVSR
MRYISSRVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPSGVRPVPLDIHIQGVDIA
NFEARMQAMTKHTYTAIVQHARKGKPAIVYVPTRKHARLTAVDLMSYSSMDREDTPMFLL
RSAEELEPFVERINEPMLKETLKYGVGFLHDGLSGTDQEIVKTLFETGWIQVCVMNSTMC
WGVPLSAHLVVVTGTQYYDGRENMHTDYPVPDLLKMMGHASRPLVDSCGKCVILCHAPRK
DYYKKFLYDAFPVESHLQHYVHDNLIAEVVVGVIQNKQDAVDYLTWTFMYRRLTQNPNYY
NLQGVSHRHLSDHLSELVENAISDLEASKCVAVEDDFLLSPLNLGMIASYYYISYTTIER
FSSSLTSKTKLKGLLEILASASEYERLPIRPGEEELTRRLINHQRFSFENPKYTDPHAKA
SALLQAHFSRQVVGGNLASDQQEVLLSAIRLLQAMVDVVSSNKWLSLALLAMEVSQMVTQ
GMWEHDSMLLQVPHFTNELAKKCQENPGKSVETVFDLVEMEDDERRELLQMSDLQLMDVA
RFCNRFPNIDLTYDVLNRDNVSAGDNVSVQVTLERDLEGRTEVGPVFAPRYPTTKEEGWW
LVVGDAKSNQLLAIKRVTLQRKSSVKLNFSAPAEAGTRTYTLYFLCDSYLGCDQEYIFTL
DVKTAMIKEDSERV
NT seq
6345 nt
NT seq
+upstream
nt +downstream
nt
atgggccatttggaagcacaagcagtgtatgaatacggagccaactcacctgagtctctt
tatgggaaaatagaccccaaaacatttggtgatcgtgcttacaagggtagacctgacaag
gctgctaggaagcgcgaaccactacttgtctctgattggcatagacaaagcaagaagaga
cggttacttgaaagtgttcttacttcaactgaggaagaaggtgtttaccagcctaaaacc
aagcaaacgagggctgcttatgaggccctgctcagcctcattcagcagcaacttggtgac
caaccattgaatattgttactgctgcagctgatgagatattggctgtcttaaaaaatgac
tactttaccaaccctgataagaagaaaaaccagattgaaaacctgttaaattccgtatca
aatgaggtgtttgaccagttggtgtcgattgggcgactcatcactgattatcaagatgat
ggcgatgcacctatggatgatgatgttggtgtagctgttcagtttgaggagaatgaagaa
gaagaagaagagagtgaccttgatgatgaagaggatgaggacaatgatgtgctggatgcc
gactgttctagtgctatgcctatcattgctgattatgagatgcgtgaggcggatgacgga
atgtccttgaatgttcaggacgtagatgcttattggcttcaaagaaagatctctcaagct
tatgagccccagatcgatccgcaacagagccaaaagcttgctgaagaggttctcaaaact
cttgctgaaggcgatgatcgtgaagtagaaaccaagctactgttgcatctccaatttgat
aagttcagtctcatcaaatatcttctgaggaatcggctaaaggtagtatggtgtacccgt
cttgcacgggccgaagaccaatcgaaaaggaaggaaattgaacaagagatgttgcggttg
gggccggatcatgccgcggtactagagcagttgcacgctactagggctactgcaaaagag
aggcagctgcatttggagaaaagcattagggaagaagctcggcatctcaaagatggtgac
agagataatgataatgcttggttaatggggaaacaccagctgcttgatcttgacagcctt
gcatttcatcaaggtagtctgtcgatggcaaataaaaaatgcgagcttccagtggggtct
tataggaatcataagaaggggtatgaggaagttcacgtgccagcactgaagccaaagcca
ctagcccctggagaagagcttgtgaagatctcctcctttccggtgtgggctcaaccagcg
ttcagtgggatgacccaattgaatagggttcagagtaaagtatatgagactgccctcttt
tccccagagaacatcttgctctgtgctccaacgggtgctgggaagaccaatgtagctatg
ctcactatacttcagcaaatcgctctaaaccgcaacttagatggatcattcaaccacacc
aattataagattgtgtatgtggcacctatgaaagcccttgtttctgaagtggttggcaat
ctctccaagcgtttggaacattacggtgtcaaggtgaaagagttgagcggtgatcaaaca
ttaactcgtcaacagattgaagggactcaaattattgtgactacccctgagaagtgggat
attataactagaaagtcaggcgatcgcacctatatgcagcttgttaaacttgttattatt
gatgagatacatctcctgcatgacaatcgaggtcctgtcttggagagtatcattgcaaga
actatcagacagattgaaatcacaaaagagcatattcggcttgttggattgtcagcaact
cttccaaattatcaggatgtggctttgtttttgcgagttgatctgaataaaggactcttc
cattttgacaatagctatagacctgtaccgttagctcaacagtatattggaattactgtt
aagaagccactgcagaggttccagttgatgaatgatatttgctatgagaaggtgattagt
attgcaggaaagcatcaggtgcttatctttgttcattctaggaaggaaacaactaaaaca
gctcaagcaatccggcatgctgcacttggtaatgacacccttactaagtttttgaaggag
gatggtttaactcgggaaattttacagtctcaaactgagcttatcaagagcaatgatctc
aaagatcttttaccatatggttttgcaattcaccatgcgggtttggtcagaactgatcgg
cagcttgtggaggagctttttgctgatggacatgtgcaagtgttggtctcaactgcaact
ttagcttggggtgtaaatttacctgcacatactgtcattataaaaggtaccaagatttac
aatcctgaaaaaggagcatggactgaactcagtcctcttgatgttatgcaaatgcttggc
cgtgctggaaggcctcaatatgacacttatggtgaaggaatcatcataactgaacacagt
gaactgcaatattatctttctttgatgaatcaacagcttcctattgaaagtcaatttata
tccaagttggctgatcaattgaatgcagagattgttcttgggacagtacagaatgtcaaa
gaggcatgcaagtggctcctatatacttacctctatgttcgcatggtacagaatcccaca
ctttatggtctagctgcggatgccctcgaaactgattatgctttggagggaaggcgtgct
gacttggtttattctgctgctacgttgctggacaagagtaacttggttaagtacgataag
agaagtggatatttccaggtgactgacctggggcgcattgcgagctattattacataact
catgggacaatttccgcgtacaatgagcatttgaagcccatcacgggtgatattgaactt
tgtaggcttttctctcttagtgaggaattcaaatatgtaacagtcagacaagatgagaaa
atagaattggcaaagcttctagatcgtgtccctattccgataaaagagagtcttgaggag
cctagcgccaagatcaatgttctactgcaggcgtatatttcacggctgaagcttgaaggg
ttgtctctatcatccgacatggtttatatatctcaaagtgctgcacgtctgatgcgagcc
ctttttgagattgttctgaagagaggatgggctaagttagctgagaagaccttgaaatgg
tgcaaaatgataagtaagaggatgtggagcgtacaaacaccactccgccaattccacgac
atttcaaatgagatcttgatgaagttggagaagaaagatcttgcttgggagcgttattac
gatctttcatcacaagagttgggagagcttatccggttcccgaagaagggtagaacgtta
cacaagtgtattcatcagttcccgaagctgaacctcgcagcacatgttcagccaattacc
cggtcagtcttgagggtagaattgaccattacaccggatttccagtgggaggacgcggtc
catggttttgtagaacctttctgggtgattgttgaagacaatgatggggaatatattctt
catcatgaatatttcatgctgaagaagcaatatattgataaagaccagactttgaacttc
acagtcccaatatatgagccattgccccttcagtatttcattcgtgttgtctctgacagg
tggttagggtctgagactgttttgccagtctctttcctacacctgactttgccagaaaaa
tatcttcctcccactgagttactagacttacaacctctgccagttactgcattgaggcat
ccagcatatgaagcactttatcaagattttaagcatttcaatccggttcagactcaggta
ttcaccgttttgtacaattcagatgacaatgtcttggttgcagctccaactggtagtggg
aagaccatttgcgctgaatttgccatattgaggaatcatcagaaaggacctgataatatc
ggtcgtactgtgtatatagctccactagaggctctggccaaggagcagttcagtgattgg
aagaagaaatttgcagactctctgggaattagagttgttaaattaattggggagactgcc
aaagatctgaagctgttagagaagggtcagttaattatcagcacgcctgagaaatgggat
gctttatctcgtcgctggaaacagcgaaagcatgttcagcaagtcagtcttttcattatt
gatgaattgcacctgattggtggtcaaggtggcccaatcctggaggtgattgtctctcgg
atgagatatatttcaagccgggttgagaacaagatccgcatcgttgctttgtcaacttcc
ctagctaatgccaaggatttgggagaatggattggggctacatctcatgggctcttcaac
tttccttctggtgttaggcccgtgccactggatattcacattcaaggtgttgatattgcc
aactttgaagctaggatgcaagccatgacaaaacacacatatactgcaattgtccaacat
gcaaggaaaggaaagcctgcaattgtgtacgttcccacgaggaagcatgcacgcctgact
gctgttgatctgatgagttattctagtatggacagagaagacacacctatgtttctgcta
cgatctgcagaagagctggagccttttgtggagaggatcaatgaacctatgctgaaagag
acactcaagtatggtgtgggcttcttgcatgacggattgagcggcactgatcaggaaata
gtgaagacgttgtttgaaactggatggattcaagtatgtgtaatgaacagtacaatgtgt
tggggagtaccactatctgcccatttggtggtggtgacgggaacacagtactatgatggt
agggaaaatatgcacactgattatccagttcctgatttgttgaagatgatgggtcatgcc
agtcgacctcttgtagatagctgtgggaagtgtgtcatcctttgccatgcaccacgcaag
gactactacaagaagttcttgtatgatgcattccctgttgaaagccatctgcaacactat
gtccatgacaatttgattgctgaggtggttgtgggagttattcagaacaagcaggatgcg
gtggattacctaacatggaccttcatgtatagaaggctgacacagaatccaaactactac
aatctgcagggtgttagtcacaggcatctgtcggaccacctctcagagctggtggagaat
gctatcagtgacttggaggcaagcaaatgcgttgctgttgaggatgactttttgctttca
cctctgaaccttggcatgatagcgtcatactattatatcagttacacaacaatagagcga
tttagctcttccctgacctccaaaacgaagttgaagggcttactggaaatattggcttca
gcgtcagagtatgaacggttgccgataagaccaggtgaagaggagttgacaagaaggttg
attaatcaccagcgtttctcctttgagaatccgaaatacacagatcctcacgccaaggct
agcgctcttttacaagcccatttctctaggcaagtggtgggtggaaatcttgcttctgac
cagcaagaggtgcttctttctgctattaggctgcttcaagcaatggttgatgttgtttcc
agtaacaaatggcttagtctagcacttctagcaatggaggtgagccagatggtgacacag
ggaatgtgggaacatgactcgatgcttcttcaggttccacactttacaaatgaattggct
aagaagtgccaagaaaatccaggaaagagtgtagagacagtgtttgatttagtggagatg
gaagatgacgagaggcgtgagctcttgcaaatgtcggacttacagcttatggatgttgcc
cggttttgtaatcggtttccaaacattgatttgacatatgatgtgttgaaccgtgataat
gtgagtgctggagacaatgtgagtgtgcaggtaacccttgagcgagatcttgaaggtaga
acagaggttggacctgtttttgcacctagatatcccacaaccaaggaagaaggatggtgg
cttgttgtcggcgatgcaaagagcaaccaactgctggccattaagagagttaccttgcaa
aggaagtccagtgtcaagctcaatttttctgcacctgcagaagctggaacgaggacctac
acactctatttcctgtgcgattcttatctgggttgtgaccaggagtatatttttacactt
gatgttaaaacggcaatgattaaagaggacagtgaaagagtctga
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