Nicotiana tomentosiformis: 104086293
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Entry
104086293 CDS
T05025
Name
(RefSeq) zinc finger CCCH domain-containing protein 49-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104086293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nto03041
]
104086293
Spliceosome [BR:
nto03041
]
Complex B
Other components
Prp19-related factors
104086293
Complex C
104086293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
RRM_occluded
zf-CCCH_10
RRM_YTH1
zf-CCCH_12
zf-CCCH_3
RRM_3
zf-CCCH_4
Nup35_RRM_2
zf-CCCH_PARP12
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
104086293
NCBI-ProteinID:
XP_009588823
LinkDB
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Position
11:complement(1977978..1983386)
Genome browser
AA seq
476 aa
AA seq
DB search
MAHRLLRDAEADGWERSDFPIICESCLGDSPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKVRPNDTIMKLQRTSPYYKRNRAHVCSFYIRGQCTRGLECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPTLEAPDDESIRTLYVGGVDARIT
EQDLRDHFYAHGEIESIKMVVQRGCAFVTYTTREGAEKAAEELANKLVIKGLRLKLLWGR
PQAPKPESEVPDEARQQAAVTHSGLLPRAVISQQQNQPFQPPGTQDQPPSMPYFNIPPMP
QQDRPYYPSMDPQRMGALVQSQEGASSSATGSGPGENRSGSENQQGQRYAYPPGAPPQVQ
FYPPYYPPYGYTPPPPPPYQQYPPQPYQATAPPPPGGQQSAHLQLPQSAAAAAQQP
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggcgcataggttgctgagagatgcagaagctgatggatgggaacgatctgatttccct
attatatgcgagtcgtgtcttggcgacagtccttacgtgcggatgacaaaagcagactat
gacaaggagtgcaagatctgcacacgacccttcacagtgtttagatggaggcctggtcgg
gatgcaagatacaaaaagactgagatctgtcagacctgcagcaaattgaagaatgtttgt
caagtttgcctattggatcttgaatatggtttgccagttcaggtccgagacactgctctc
agtatcaactcgaatgatgccatcccgaagagtgacgtaaatagagaatattttgcagag
gaacatgaccgcagggcaagagctggtattgattatgaatcttcatatgggaaagtccgt
ccaaatgacactatcatgaagcttcaaagaacaagtccatactacaagagaaatcgggca
catgtttgcagtttctatatacgtggtcaatgtacaagaggtctggagtgtccttacagg
catgagatgcctgagacaggagaattgtcacagcaaaatattaaagaccgttactatgga
gtcaatgatccagtggctttaaagctactgaataaagcaggtgaaatgcctacattggag
gcccctgatgatgagagcattagaaccctctatgtcggtggtgttgatgcaagaatcacc
gaacaggaccttagggaccacttttatgcacatggtgaaattgagtccatcaaaatggtg
gtccaacgtggttgtgctttcgtaacttacacaaccagagaaggtgcagagaaggcagct
gaggaactagcaaacaagctggtgataaagggcctgagactgaagctactctgggggaga
cctcaagcacccaagccagagtctgaggtccccgatgaagcaaggcagcaggctgctgtg
actcacagtggattgttgcctagggcagtcatatcacagcagcaaaatcagccatttcag
ccaccaggaactcaggaccaacccccatccatgccttacttcaacatacccccgatgcct
cagcaagacagaccatattatccatcaatggatccacaaaggatgggtgccctagttcaa
tcccaggagggggcttctagttcagctactgggtccggtcccggtgaaaataggagtggt
tctgagaatcaacaaggacaacgttatgcatatccacctggggcaccacctcaagttcaa
ttttatccgccttattatccaccctatgggtatacgccaccacctcctccaccttatcaa
cagtatcctcctcaaccttatcaagctacagcacccccaccacctggtggtcagcaatct
gcacatctgcagctgcctcagtcggcggcagcagccgcacaacagccttaa
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