Nicotiana tomentosiformis: 104086376
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Entry
104086376 CDS
T05025
Name
(RefSeq) endoribonuclease Dicer homolog 3a isoform X3
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
nto
Nicotiana tomentosiformis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nto03036
]
104086376
Chromosome and associated proteins [BR:
nto03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104086376
microRNA pathway
RISC loading complex
104086376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
PAZ
SWI2_SNF2
dsrm
SNF2-rel_dom
DND1_DSRM
Motif
Other DBs
NCBI-GeneID:
104086376
NCBI-ProteinID:
XP_009588925
LinkDB
All DBs
Position
8:complement(87259313..87304694)
Genome browser
AA seq
1651 aa
AA seq
DB search
MEKKKENPLKRNFEDLCNEAEQMAVEKKQKEDFIPRDYQLEVYEVAMRRNTICVLETGAG
KTYIAVMMIREISKTLRTGDEKKFIVFLAPTVHLVHQQYEVIRHHTQLAVQEYYGAKGVD
DWNVEKWKTETDDNDVLVMTPQIFLDALRKGYIKFGRVCFLILDECHRASGKHPYKMIMT
EFYHQSTRTSKVFGMTATPVTRKGVSSSTDCEEQISELESLLDSQIYATEERVGLDEFVP
SAKETCKFYDPIVSSTLEIKAKLEASWSKFDAALVDLQLSVSSQYKDTDDNYMNLWKRLS
NFYAKILCCLENLGIICAYEAVTVCLENVPDDKEENEILRKSSLQQRYFLEEALSIIQES
MPQDCESLLDVGYDSSATLSMGHISSKLHVLLEIFKSLRKATQVRCLVFVERIITAKVIE
RVMKKMTWFSDFTIAYLTGTNTSVDALTPKVQKETLECFRSGKVNLLFATDVVEEGIDVP
HCSSVIRFDLPKTVRSYVQSRGRARQTESLYILMLERGNMKHREQMFDIIRSEYSVTDTA
IKRDPDVCVVKPCLVKETNVYYVEATGASVTADSSVSLLNKYCEMLPGDKFFSPKPNFEY
ILSGDLYQCKLTLPTNAAFQTMVGPECRNIQLSRQLVCLDACKKLHQIGALNGHLLPLNE
KPSKSDLHVQDKHVGAGTTKLKELHGTAHISALSGTWGYDPNGEVFQAYKMNFSCNIPEV
NYSSFVLLLQSELDDDVGNVEVELFLVSKFVQSSVSHCGKLHLDAQQVAKAKLFQELFFN
GVFGKLFVKSSGGRKFLLETDESLWEPSNMYLLLPLDPLDSSCVPCRIDWGGIESSVSVV
KFLKRNAWLNAEQSETTRKNSLVDRTASFMVDLDQTDLIHFANMSVCRSNLTDMVVVAIH
TGRIYSVLVAVANTSAESPFEVNSEATQSPFSSFADYFHKKYGIVLVYPGQPLLLLKQSH
NAYNLLVDFQKEGISCGTNSKDSKMVVQKPLNNVHIPPELLVGIDIRIDILKSFYLLPSL
MHRLETLMLASELRKEITSHSGDLHISSSLILEALTSLRCNESFSMERLELLGDSVLKYA
VSCHLFLKYPKKHEGQLSDQRSWAVCNSTLHKVGTSRHLQGYIRDGAFDPRRWTAPGQLS
LRLCPCDHGVETSEVPLDKKFLTEDPKVVVGKHCDRGHRWMVSKTISDCVEALIGAYYVG
GGFIAALKLMKWLGVEAELEPSLVEDAIKTASLYSYTPKAKDIEDLELKLTYKFSVKGLL
LEAITHATVLEVDVSYNYQRLEFLGDSVLDILITWYLYQKHKDIDPGELTDLRAASVNND
NFAYAAVKRELHVHLQHHSGYLESEISAFVKSVSDSCSLQGNKAPKVLGDLVESIAGAIL
IDTKLNLDEVWKIVKPLLSPIVTPDKLELPPLRELIELCDSLGYFLKDHCMVKGDTVHAE
LRLQLKDELLVAEGCGQTRKNAKGQAALKLLKDLEYKGISSKKKKQETSLVDVPHSLGSD
GDICSQANNTCPAMAPCKKQKTILSNLETAKAQPSSACNSNKDIQEIGPINMKKGGPRQS
LYELCKKLQWPMPSLESTERKSKSLIECGEGSDKRKVYNTFASQISLTIPDYGLIELTGD
ERADKKSSQDSAALLMLYELERRGKVIIGNQ
NT seq
4956 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaagaaagaaaatccattgaagagaaactttgaagacttatgtaatgaagct
gaacaaatggctgtagagaagaagcagaaggaagattttattccaagagattaccagttg
gaggtatatgaagtggcaatgaggaggaacactatatgtgtattggaaactggggctggc
aagacatatatagcagtgatgatgatcagagaaattagtaaaacattgaggactggtgat
gagaagaagtttattgtattcttggcacccactgttcatcttgttcatcagcaatacgag
gttatacgacatcatacgcagcttgcggttcaagaatactatggggccaaaggagttgat
gactggaatgtagaaaaatggaaaaccgaaactgatgataatgacgttttggttatgaca
ccccaaattttcttggatgcattgagaaagggttacataaaatttggtagagtgtgcttt
ctgatactagacgagtgccatcgtgccagtggtaaacatccctataaaatgattatgacg
gagttctatcatcaatccacaagaacatcaaaggtttttgggatgactgctacccctgtg
actagaaaaggtgtttcatcttcaacagactgcgaggagcaaatatcagaacttgaaagt
cttcttgattcccagatatatgcaacagaggagagggtggggctggacgaatttgttcct
tctgcaaaggagacttgtaaattctatgatccaatagtgtcttcgactttagaaataaag
gcaaaattggaagcttcatggtcaaagtttgatgctgcattagttgacttgcagctgtca
gtatcaagtcagtacaaagatacagatgacaactatatgaatctttggaagagattatcc
aatttttatgcaaagatattgtgttgccttgaaaatctaggcatcatatgtgcgtatgag
gctgttacggtctgtttggaaaatgtccctgatgacaaagaggaaaatgagattcttagg
aaaagttctctccaacagagatacttcttggaagaggcattgtcaattattcaggaatca
atgccacaagactgtgagagtcttctagatgttggatatgactcgtcagcaacactgtca
atgggccatatatcttcaaaactgcatgtgcttcttgaaatttttaaatcccttaggaaa
gctacacaagtacgctgtctcgtttttgttgaaagaattatcacagctaaagtaattgaa
agagttatgaagaaaatgacctggttttcagatttcacaatagcatatttgactggaaca
aacacatcagttgatgcactgacaccaaaagtgcaaaaagaaaccttggaatgttttcgc
tctggaaaggtcaatttattatttgccactgatgtggttgaggagggaattgatgttccg
cactgttcttctgtgatacggtttgatttaccaaaaacagttcgaagttatgtccagtct
aggggacgagctcgtcagactgaatctctgtatatactaatgcttgagaggggaaacatg
aagcacagagaacagatgtttgatatcattaggagtgaatattctgtgacagatacagct
ataaaaagagaccctgatgtttgtgttgtgaaaccttgtctagtgaaggaaactaatgta
tattatgtggaggcaactggagcttcagtaactgcagattctagtgtcagtctcttgaat
aaatactgtgaaatgctgcccggagataagttcttctctccaaagcccaattttgagtac
atcttgtctggggacttgtaccagtgtaaattgacattacctacaaatgcagctttccaa
acaatggttggtccagaatgcaggaatattcaattgtcaagacagctcgtctgcttggat
gcatgtaagaagctgcatcagataggtgctctgaatggtcatcttcttcctctcaatgaa
aagccttccaaaagtgatttgcatgtgcaggacaaacatgtaggggcaggaacaacaaag
ttgaaagaattacacggcacagctcatattagtgcattatccgggacgtggggatatgac
cctaatggagaagtatttcaggcgtataaaatgaacttctcttgcaacataccggaagtg
aattattccagctttgtccttttgcttcaatcagaactagatgatgatgtgggaaatgtg
gaagttgaacttttcttagtctccaagtttgtccaatcatctgtgtcgcattgtgggaaa
ctccatttggatgcccaacaggtggcaaaagcaaaactcttccaagaactattctttaat
ggggtgtttggtaaattgtttgttaaatcatcgggtggaaggaaatttctacttgagaca
gatgagtctttatgggagccatcgaacatgtacttgctactaccactggatcctttagat
tcaagttgtgtaccttgtagaatagattggggaggaattgaatcatctgtgtcagttgtg
aaatttttgaaaagaaatgcttggttaaatgctgaacaatctgaaactacccggaagaat
tccttagttgataggactgcatcgtttatggtagatctcgatcagacagatttgattcac
ttcgccaatatgtcagtctgtagaagcaaccttacggacatggttgttgtggccattcat
accggaagaatctattctgttctggttgctgttgccaatacttctgcagagagccccttc
gaagtaaattcagaagctacccagtcacccttttcatcatttgctgactacttccataaa
aagtatggaattgttttagtgtatcctggacagcctttgttgctgctaaagcaaagccat
aatgcatacaatcttcttgtggattttcaaaaagaaggcatttcctgtggaacaaattca
aaagatagtaaaatggtggtccaaaagccgctgaataatgttcacattccaccagaactt
ctggtgggtatagacattcggatagacatcttgaaatccttctacttgctaccctcatta
atgcaccgtctggagaccctgatgttggctagcgagttgaggaaagagataacaagtcat
tcaggcgatttacatatatcaagctcattgattctggaagctcttactagtctaagatgc
aatgagagtttctccatggaacgtctggagttgcttggagactcagttctgaagtatgct
gttagttgtcacctctttcttaaataccccaagaagcatgaagggcagctatctgatcag
cgttcatgggctgtttgtaactcaaccctccataaagtgggaactagtcgccatttgcag
ggctatataagggatggagcatttgatccacgccgatggactgctcctggacagctttcc
cttcggctttgtccttgtgaccatggggttgagacgtcagaagtgcctttggacaagaaa
tttttgactgaagatcccaaagtagtagttgggaagcactgtgatagagggcatagatgg
atggtctcaaaaacaatatctgactgtgtcgaagcgctgataggtgcatactacgttggt
ggtgggtttattgctgccctgaaattgatgaaatggcttggtgttgaagctgaacttgaa
ccttcattagtagaggatgcgatcaaaactgcatctctttactcctatacccctaaagct
aaagatattgaagaccttgagttgaagcttacctataaattttctgtcaagggattgcta
ctagaagctataacacatgctactgtgctagaagtggacgttagttacaattatcagaga
cttgaatttctcggcgactcagtactggacattctcattacctggtacctttaccagaag
cataaggatattgatcctggggaactgacagatttgcgcgctgcttctgtcaataatgat
aattttgcttatgctgctgtgaagagggagcttcatgtccatcttcaacatcactctgga
tatcttgaaagtgaaatatcagcatttgtgaagtcagtctctgattcttgttcactccaa
ggaaacaaagccccaaaggtacttggagacttggtggagagtattgctggagcaatactt
attgatactaagcttaacctggatgaagtttggaagatcgtcaagccactattatctccc
atcgtgactcctgataagctcgaactacctccgttgcgtgagctcatagaattgtgtgac
tcgcttggctacttcttgaaagaccattgcatggtgaagggggataccgtgcatgcagag
cttaggttacagctgaaagatgagttgctggttgctgagggatgtggacaaactagaaaa
aatgcaaaggggcaagcagctctgaaattattgaaggacttagagtataaaggaatttca
tccaagaaaaagaaacaagagaccagccttgttgatgtgccacattctttaggctctgat
ggtgacatctgcagccaagcgaataatacatgtcctgctatggctccatgcaaaaagcaa
aagacaatactttcgaatttagagacggccaaagctcaacctagcagtgcttgtaattca
aataaggacatccaagaaattgggccaatcaacatgaaaaagggtggaccacgccaatca
ctttatgaactgtgcaaaaaactgcagtggcctatgcctagtttagagtcaacagagcgt
aaatccaagtcactgattgaatgcggtgaaggctctgataaaaggaaggtttacaacact
tttgcatctcaaatctcgttgaccatacccgactatggtttgatagagcttactggggat
gaaagagctgataagaaaagttcacaagattcggctgcacttctcatgctgtatgagctt
gaacgacggggaaaagtcataattggtaatcaatga
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