Nicotiana tomentosiformis: 104086938
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Entry
104086938 CDS
T05025
Name
(RefSeq) SWI/SNF complex subunit SWI3D isoform X2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104086938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nto03021
]
104086938
03036 Chromosome and associated proteins [BR:
nto03036
]
104086938
Transcription machinery [BR:
nto03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
104086938
Chromosome and associated proteins [BR:
nto03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
104086938
PBAF complex
104086938
GBAF(ncBAF) complex
104086938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
TetR_C_26
Motif
Other DBs
NCBI-GeneID:
104086938
NCBI-ProteinID:
XP_009589593
LinkDB
All DBs
Position
1:75153801..75162678
Genome browser
AA seq
945 aa
AA seq
DB search
MEEKRKDAGTPPPAVADTPTKAADVPSAEAPTSRRRGGGQKRKASAIGSGGAGSTPPSTS
SKRQAREKQSSVPFPPIHNGPLTRAARQQPNNAPAPAAAASPSSSGIKSESEVLPTAVAG
GEEALKVERELNEAKEDLEALEAEIEAEIEAIRSRDPNAHVVPTHAGWFSWRKVHPLEKR
TMPSFFSGKSESRTSEIYMEIRNWIMKKYHADPNVQIELSDLSELSSGDLDAKQEVMEFL
DYWGLINYHPFPQTNSDMRVDIDADESAKTDSLVDKLFRFESDETWTPVLPRSSVATPMS
SGFFPESAIAEELMKSEGPAVEYHCNSCSADCSRKRYHCQKQADFDLCSECFNNGKFGSG
MSPSDFILMEPAEAGGASGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHF
IEMPIEDIFLDTDVESNKSVKEKEDTVLSKDDTSASIDAPETKESKDDGNDNQLSSTVET
SKPENVNELIPREEVGENCALNALRDAFTAVGSYPPPGERVSFAEAGNPVMALAAFLVKL
VEANRVTASVRSSLKSIFGNPSGEQLASRHCFVLEDPPEGKTSPDSDRPANGSVDPEDKK
DEDENVEMQKEEKLTSVIDENGLSIAPNKETKAEVNIDKECEEQDGENHEEKNEKELGEA
TQLVSTSDENPEKSDTSKQSSQIPTDKDEEPASRKGPDDAGLAVGKAPSTTSESDDLTSK
LELPPGFEKESVDRALTAMPSDSPDTPKDEDMMPAVQTKEPEQSAKSNTVAENDAGAGEA
KDSVDGRKDPLKTKNDLDIDKINRAAVTALSAAAVKAKCLADQEEDQIRQLTTSLIEKQL
HKLESKLTFFSDMDNVVMRVRELLERSKQRLIHERNQIIQSRYASSSRPVPQSLLANRPG
MTASRPLNAMSSQRLPNSRPIMAGIPTPSSFMPTTVTGNSMQPSK
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaaacggaaggacgccggaactccaccaccggcagttgccgacacgccgacg
aaagcggctgatgttccgtctgccgaggcacctacgtctcgtcgaagaggcggcggccag
aaacgaaaagcaagcgccattggaagcggcggcgctggttcgactcctccatcaacttcg
tcgaagcgtcaggcgcgtgagaagcagtcatcagtaccttttccaccgatccacaacggt
ccgctcacgagagctgcacggcagcagccaaacaacgcccccgcccccgccgcagctgct
tctccgtcaagttctggtatcaagagtgaatcggaggtgctgccgacggctgtggccggc
ggagaagaggcgttgaaggttgagcgagagttaaatgaagctaaggaggatttagaggca
ttagaggctgaaattgaagctgaaattgaggcaattagatcccgagatcctaatgctcac
gttgtgccgactcatgctggttggttttcttggagaaaggttcatcctttggagaagcga
acaatgccgtcattcttcagtgggaagtcagaaagtaggacttcagaaatatacatggag
atacggaattggatcatgaaaaagtatcacgctgaccccaacgttcaaattgagttgagt
gatttgtctgagctctcatcaggagatttggatgcaaagcaggaagtgatggagtttttg
gattactggggtttaattaattatcaccccttcccacaaactaattcagatatgagagtt
gatattgatgcagacgagtcagcaaagacagattctttggttgataagttgtttcgattt
gaatcagatgaaacatggaccccagttcttccgaggtctagtgtagctactcctatgtct
tctggtttttttccagagtcagctattgctgaagaactgatgaagtctgaagggccagct
gttgagtaccattgtaactcttgttcagcggactgctcaagaaagcggtatcattgtcaa
aagcaggcagattttgacttgtgtagcgaatgcttcaacaacgggaagtttggatctggg
atgtccccttcagatttcattcttatggagcctgctgaggctggcggcgcaagtggtggg
aagtggacagatcaggagactcttcttctccttgaggcgctagagctttataaggaaaac
tggaatgaaattgctgagcatgtggctacgaagaccaaagctcagtgtattctgcacttt
attgaaatgccaatagaggatatattcctggatactgatgttgaaagtaacaagagtgtt
aaagaaaaagaagacacagttttgtctaaagatgatacatcagccagtattgatgcccca
gaaacaaaagagagtaaggacgatggaaatgacaatcagctttcatccacagtggaaact
tcaaagccagagaatgtgaatgagctaattccccgggaggaagttggtgagaactgtgca
ctcaacgcgctgagggatgcatttacagctgttggttcttatcctccacctggagaacgt
gtttcatttgctgaagctggcaatcctgtaatggcactggcagcgttcctggtgaaactg
gtagaagctaacagggttactgcctcagtacgcagctctttgaaatccatttttggcaat
ccatctggtgagcagctagcctcaaggcactgttttgttttggaagatccaccagagggg
aagacatcaccagattcagatagacctgctaatggatcagttgatccagaagataagaaa
gatgaggatgagaatgttgaaatgcagaaagaagaaaaattgacatcagttatcgatgag
aatggcttgtcaattgcaccaaacaaagagaccaaagctgaagtgaacattgacaaagag
tgtgaagagcaggatggtgaaaaccatgaagagaaaaatgaaaaggaacttggagaagcg
acgcaattggtctctacgagtgacgaaaatccagagaaatctgatacttcaaagcaatcc
agtcaaattcctactgacaaagacgaggaacctgcatcacgtaaaggaccagatgatgca
gggttggcagtgggaaaggcaccaagtaccacatcagaatcagatgatctaacgtctaaa
ttagagctcccacccggctttgaaaaggagtcggttgatagagctttaacagccatgcct
tctgactctccagatactcctaaagatgaggacatgatgcctgctgtgcaaacaaaggag
cctgagcaatctgcgaaatcgaacactgtagctgaaaatgatgcaggggctggagaagcg
aaagactctgtagatgggagaaaagatcctttgaagaccaaaaatgatctggatatcgat
aagatcaatcgtgcagcagtcactgctctgtcggctgcagcagtcaaggcaaaatgtctt
gcagatcaagaagaggaccaaattcggcagcttactacgtcattaatagagaagcagtta
cacaagctggagagcaagttaaccttcttcagtgacatggataatgtggttatgagggtc
agagaactgctggagaggtcaaaacagaggcttatccatgagcgtaatcaaataattcaa
tcaagatatgcctcttcatctcgtcctgtgccacaatcactacttgctaacaggcctgga
atgactgcatctaggccgctaaatgcaatgagctcccaaaggctaccgaattcaagaccc
ataatggcaggaattcctacaccaagctcttttatgcctacaacagttacaggaaattca
atgcagccctcaaagtag
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