Nicotiana tomentosiformis: 104087025
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Entry
104087025 CDS
T05025
Name
(RefSeq) zinc finger CCCH domain-containing protein 49-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104087025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nto03041
]
104087025
Spliceosome [BR:
nto03041
]
Complex B
Other components
Prp19-related factors
104087025
Complex C
104087025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_10
RRM_occluded
RRM_YTH1
zf-CCCH_3
zf-CCCH
zf-CCCH_4
RRM_3
Nup35_RRM_2
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
104087025
NCBI-ProteinID:
XP_018623176
LinkDB
All DBs
Position
4:894107..900985
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AA seq
478 aa
AA seq
DB search
MAHRLLRDAEADGWERSDFPIICESCLGDSPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFFIRGQCTRGLECPYR
HEMPETGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPDDESIRTLYVGGVDARIS
EQDLRDHFYAHGEIESIKMVLQRGCAFVTYTTREGAEKAAEELANRLVIKGLRLKLLWGR
PQAPKPETELSDEARQQAAVSHSGLLPRAVISQQQNQLPPPPGTQEQPPPMPYFNIPPMP
QQERAYYPSMDPQRMGAVVPSQEGASSSATGSGPENKSGSEKQPQVQQHYAYPPAPPPQG
QFYPPYYPPYGYMPPPLPQHYQQYPPPYQAARPPPPPAGEQAAYQQKPQPAVPAAQQP
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggcgcataggttgctgagagatgcagaagcagatggatgggaacgatctgattttccg
attatttgtgagtcttgtcttggagatagtccttacgtacgaatgacaaaagcagattat
gacaaggagtgcaagatatgcacacgacccttcacagtgttcagatggaggcctggtcga
gatgcaagatacaaaaaatctgagatctgtcagacctgcagcaagttgaagaatgtttgt
caagtttgtcttttggatcttgagtatggtttgccagttcaggtccgagacactgctctc
agtatcaattcgaatgatgcaattcccaagagtgacgttaatagagaatattttgcggag
gagcatgaccgcagggcgagagcagggatagattacgaatcttcatatgggaaagctcgt
ccaaatgacactattttgaagctccaaagaacaactccatactacaagaggaatcgggca
catgtttgtagtttctttatacgtggtcaatgtacaagaggtttggagtgcccttatagg
catgaaatgcctgagactggggagttgtcacagcaaaacattaaggaccgttattacgga
gttaatgatcccgtggctatgaagctactgaataaggcaggtgaaatgccttcattggag
cccccagatgatgagagcattagaaccctctatgtgggtggtgttgatgcaagaatcagc
gagcaggatctaagggaccacttttatgcacatggagaaatcgagtccattaaaatggtg
ttgcagcgtggttgtgcttttgtaacctacacgacaagagaaggtgcagagaaggcggcc
gaggaactagcgaacaggctagtgataaaaggcttgagactgaaacttctctgggggaga
ccacaagctcctaaaccagagaccgagctgtctgatgaagcaagacagcaggctgctgtg
tcacacagtggattgttgcccagagctgtcatatcacaacagcagaatcagcttcctcca
cccccaggcacacaggaacaacccccaccgatgccatacttcaacattccgccaatgcct
cagcaagaaagagcatattatccgtcaatggatcctcagaggatgggtgctgtagttcca
tctcaggagggggcttctagttcagctacggggtcaggtcctgaaaacaagagtggttct
gagaaacaaccacaagtacagcagcattatgcgtatccaccagcacctccacctcaaggt
caattttacccgccttactatccaccctatggctatatgcctccaccactgcctcaacat
tatcagcagtatcccccgccttatcaagctgccagacctccaccacctcctgctggtgag
caagcagcttatcagcagaagcctcaaccagcagtaccggcagcacagcaaccttaa
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