Nicotiana tomentosiformis: 104087035
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Entry
104087035 CDS
T05025
Name
(RefSeq) WD-40 repeat-containing protein MSI1
KO
K10752
histone-binding protein RBBP4
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03082
ATP-dependent chromatin remodeling
nto03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104087035
03083 Polycomb repressive complex
104087035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nto03036
]
104087035
Chromosome and associated proteins [BR:
nto03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
104087035
Histone modification proteins
HAT complexes
HATB complex
104087035
HDAC complexes
Sin3A-HDAC complex
104087035
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
104087035
PRC2.2
104087035
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
104087035
Heterochromatin formation proteins
Other heterochromatin formation proteins
104087035
Chromatin remodeling factors
NuRD complex
104087035
NuRF complex
104087035
NuRF complex (fruit fly)
104087035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1C_H4-bd
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_RIG_1st
WD_LRWD1
eIF2A
Beta-prop_HPS5
MIOS_WD40
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_NUP159_NUP214
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
104087035
NCBI-ProteinID:
XP_009589721
LinkDB
All DBs
Position
1:16266913..16272430
Genome browser
AA seq
424 aa
AA seq
DB search
MGKDEDEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
YSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRSEFGGFGCANGKVQIIQ
QINHDGEVNRARYMPQNSFIIATKTISAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTE
GYGLSWSQFKQGHLLSGSDDAQICLWDINATPKNKALDAMQIFKIHEGVVEDVAWHLRHE
YLFGSVGDDQYLHIWDLRTPSVTKPIQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL
FDLRKISTALHTLDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDLPGDDA
TKAP
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagacgaggatgagatgagaggtgaaattgaagagaggctgataaacgaagag
tacaagatttggaagaagaacacaccttttctttacgatctggttattacccacgcgctt
gaatggccttcactcactgtcgaatggttaccggaccgggaagagccgccaggaaaagat
tattctgttcagaagatgattttggggacccacacatccgaaaatgagccgaactatctc
atgcttgctcaggttcagctccctctcgaggatgctgagaatgatgccagacattatgat
gatgatcggtctgaatttggcggatttggttgcgccaatggcaaggtacaaataatccaa
cagataaatcatgatggagaggttaatcgggctcgatatatgccccaaaactcattcatc
atcgcgactaagacaattagtgctgaagtttatgtttttgactatagtaaacatccatct
aagcctcctctagatggtgcatgcaatccagatttgagattaagaggccacagcacagag
ggctatggtttgtcgtggagtcaatttaagcagggtcatttattgagtggttcagatgac
gctcagatatgtttatgggacatcaatgccactcccaaaaataaggctctagatgctatg
cagatatttaagattcatgaaggtgtcgtagaggatgtagcatggcatctgaggcacgag
tatttatttggctctgttggggatgatcagtatctgcacatatgggatctgcggactcca
tcggtgaccaagcctatacaatctgtagtcgcacatcaaagcgaggttaactgcttagct
ttcaacccctttaatgaatgggttgtagcaacaggatctacagataagacagttaaatta
tttgatctacgcaagatttctactgcactgcataccttggactgtcacaaggaggaggtt
ttccaggttggatggaatccgaagaatgaaaccatcttagcttcttgttgccttggtagg
agactcatggtttgggatctaagcaggattgatgaagaacaaacaccagaagatgcagaa
gatgggccaccggagttgctctttattcatggtggccatacaagtaaaatttctgacttc
tcatggaacccatgtgaagactgggtcgttgctagtgttgctgaggacaatatactacaa
atctggcagatggcggaaaacatctaccacgatgaagatgatctaccaggagatgacgcc
accaaagctccctag
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