Nicotiana tomentosiformis: 104087265
Help
Entry
104087265 CDS
T05025
Name
(RefSeq) general transcription and DNA repair factor IIH helicase/translocase subunit XPB1 isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03022
Basal transcription factors
nto03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104087265
09124 Replication and repair
03420 Nucleotide excision repair
104087265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nto03021
]
104087265
03400 DNA repair and recombination proteins [BR:
nto03400
]
104087265
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
104087265
Transcription machinery [BR:
nto03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104087265
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104087265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
104087265
NCBI-ProteinID:
XP_070042804
LinkDB
All DBs
Position
1:complement(85429637..85446676)
Genome browser
AA seq
769 aa
AA seq
DB search
MGHGHGDKGRPGKKIKFSSKEDYRSSAAADDQYYPEEGGDDFQDGEREGKKMDFTKLELK
PDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS
VGLETETIIAVLNKLSKTKLPKEMIDFIHASTANYGKVKLVLKKNRYFVESPFPEVLKRL
LSDEAIAKARISSEGMHGRDGFTVSKSVNEIEGRHDELINEADLAAAAEEKETHAFEIDP
AQVENVKQRCLPNALNYPMMEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGR
ARSGIIVLPCGAGKSLVGVSAASRIKKSCLCLATNAVSVDQWAFQFKLWSTIREEHICRF
TSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF
RKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW
CPMTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT
EYAMKLRKPMIYGATSHVERTKILEAFKTSKEVNTVFLSKVGDNSIDIPEANVIIQISSH
AGSRRQEAQRLGRILRAKGRHQDRVAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQ
GYSFKVITSLPPPDSGPELSYHRLDDQLQLLGKVLNAGDDAVGLEQLDEDADDIALQKAR
RYVGSMSAMSGAKGMVYMEYNTGKKQGGLIKSKPKDPAKRHQLFKKRFG
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgggtcacggacatggtgataaaggtcgaccaggcaaaaagatcaagttttcttctaag
gaggattatcggtcttcagctgctgctgatgatcagtactacccagaagaaggcggtgat
gattttcaagatggcgagagggaagggaagaagatggatttcactaaactggaactcaaa
cccgatcacgccaatcgcccattgtgggcttgtgctgatggaagaattttccttgagacc
ttctctccattatataaacaagcctatgattttctcattgccattgctgagcctgtttgc
aggccggagtcgatgcatgagtacaacttgacacctcactcgttgtatgcagctgtgtca
gttggtctcgagactgaaactataatagctgttttgaacaaattgtcaaagaccaagctt
cccaaggagatgattgatttcattcatgcttctactgctaattatgggaaagtgaagctc
gtacttaagaagaatcgctattttgtagaatctccatttcctgaggtgttgaaaagattg
ctcagtgatgaagccatagcaaaggctagaatttcttctgaggggatgcatggaagggat
ggtttcactgtaagcaaatccgtaaatgaaattgaaggcagacatgatgagttgataaat
gaagcagatctggcagcggcagctgaagaaaaagaaactcatgcatttgaaatagaccct
gctcaggtggaaaatgtgaagcagcggtgtctgccaaatgctttgaattatcccatgatg
gaggagtatgacttcaggaatgatacagttaatcctgatcttgacatggagttgaagcct
caggcacagccacggccgtatcaagagaagagtcttagtaagatgtttggaaatggaaga
gcaagatctggtattattgtgctaccttgtggtgccggaaagtctttagtaggtgtctct
gcagcaagcagaataaaaaagagctgcctttgtttagcaacaaatgctgtgtctgtggat
caatgggctttccagtttaagttgtggtctactatccgagaagagcatatatgtcgtttc
acttctgacagcaaagagcgattccgtggaaatgctggcgtggtggtgacaacgtataac
atggttgcttttggtgggaaacgttctgaagaatctgagaagatcattgaagaaataaga
aatagagaatggggtttgctcctcatggacgaggtgcacgtggttcctgcacatatgttt
cgaaaggtcattagtatcacgaaatcacactgcaaacttgggcttactgctacgcttgtc
agagaagacgagagaattacagatttgaactttcttattggtcccaagttgtatgaagcc
aattggttggatttagtgaaaggaggatttattgcaaatgtgcaatgtgctgaggtgtgg
tgtccaatgactaaggagttctttgctgaatatctgaaaaaagaaaattcaaagaagcga
caagcactttatgtgatgaacccaaacaagttcagggcttgcgagtttcttatccgtttt
catgagcagcagcgtggggacaagataattgtatttgcggacaatctttttgcacttacc
gagtatgcgatgaagcttcgcaaacctatgatctatggtgctaccagccatgttgaaaga
acaaaaattcttgaggcatttaaaacaagcaaggaagttaacaccgtattcctatccaag
gtcggtgataactccattgatattcctgaggcaaatgttataatacaaatttcgtcacat
gctggttcaagacgacaagaagctcaacgtctagggcgtattcttagggccaaggggcgc
catcaagatagggtggcaggaggtaaagaggagtataatgcgttcttttactcccttgtg
tcaacagatacccaggaaatgtactactcaaccaaaaggcagcagttcttgattgatcaa
ggttatagctttaaggtgatcacaagcttgccgcctcctgattctgggcctgagttaagc
tatcaccgtcttgatgaccagcttcaacttcttggaaaggtactgaatgccggtgatgat
gcagtcggtttggagcagctagacgaagatgcagatgatatagctcttcaaaaagctcgt
cgctacgtgggttctatgagtgccatgtcaggagctaaagggatggtttatatggagtac
aatacgggaaagaagcagggaggccttattaaaagcaagcctaaagatccagccaagaga
catcaattattcaaaaaacgctttggttga
DBGET
integrated database retrieval system
