Nicotiana tomentosiformis: 104087455
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Entry
104087455 CDS
T05025
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104087455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104087455
03041 Spliceosome [BR:
nto03041
]
104087455
03009 Ribosome biogenesis [BR:
nto03009
]
104087455
03016 Transfer RNA biogenesis [BR:
nto03016
]
104087455
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104087455
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104087455
Spliceosome [BR:
nto03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104087455
Complex C
U4/U6.U5 tri-SnRNP related factors
104087455
Ribosome biogenesis [BR:
nto03009
]
Eukaryotic type
Pre-60S particles
Helicases
104087455
Transfer RNA biogenesis [BR:
nto03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104087455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
104087455
NCBI-ProteinID:
XP_009590222
LinkDB
All DBs
Position
1:21162048..21171976
Genome browser
AA seq
994 aa
AA seq
DB search
MGSFKRKSQELSNNEGNIIPPPSKQMKQNGLVDEAVACVHDVSYPEGYVPSASTSTLPQP
DAKPAKEFPFTLDPFQSEAINCLNNGESVMVSAHTSAGKTVVALYAIAMCLKNNQRVVYT
SPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYNGSNVIREVAW
VIFDEVHYMRDRERGVVWEESIVMAPENSRFVFLSATVPNAKEFADWVAKVHQQPCHIVY
TDYRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKALNALVPANEGDKKRENGKWQKG
LVVGKSGEDSDIFKMVKMIIQRQYDPVICFSFSKRECEFLAMQMAKMDLNNDDEKANIET
IFWSAMDILSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFAT
ETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDEK
LEPPTAKSMLKGSADALNSAFHLSYNMLLNQIRCKDADPKNLLRDSFYQFQADRAIPDLE
KQAKILEEERDSIVIEEEDSLERYYSLLEQYKSLKRDVRNIVLSPKYCLPFLQPGRLVCI
ECTKVDDDVPTFSIKEEVTWGVIINFERVKGLSEDDANKKPEDANYTIDVLTRCIVQKDE
VGRKTIKIVPLKNAGEPAVVSLPLSQIDSLSSVRLVIPKDLLPSEVRENTLKKVSEVLNR
FSREGMPLLHPEDDMKVQSSTYRKASSKLEALESLFEEHKIATSPLIKEKLMVLHKKKEL
TGKIRSIKRAMRTSKALAFKDELKARKRVLRRLRYITSEDVLESKGNVACLISSADELTL
TELMFNGTFEKIKVEELVTLLSCFVWQEKLQDTQKPREELELLFAQLQDTARRVAKVQLE
SKVQIDVENFVSSFRPDIMEAVYAWATGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLI
LAAQKVGDEEHEAKFKEAVAKIKRDIVFAASLYL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgggttcttttaagaggaagtcgcaagaattgtccaataatgagggtaatattatacct
cctccaagtaaacagatgaaacaaaatggtttagtggatgaggcagttgcatgtgtgcat
gatgtatcatatccggaaggctatgttccctctgcttcaacttcaactttgcctcaacca
gacgcaaaacctgctaaggagttcccttttaccctcgacccttttcaatccgaagctatc
aattgccttaataatggtgaatccgtcatggtatcagcacacacgtcagctggaaagaca
gttgtcgcattgtatgcgattgccatgtgtctgaagaataaccagcgagtagtatatact
tcaccaattaaggctcttagtaatcagaagtatagagaattcaaagaggagttttcagat
gtgggcttgatgaccggagatgtcacgattgatcctaatgcttcttgcttggtaatgact
acagaaatctggcgtagtatgcagtacaacggatcaaatgttataagggaggtggcttgg
gttatttttgatgaggtacattacatgcgtgacagagaaagaggcgtggtttgggaggaa
agtattgttatggccccggaaaattctcgttttgtgttcctctcggccacggtgccgaat
gctaaagagtttgcggattgggttgcaaaggtccatcagcaaccatgtcacattgtttat
acggactacagacccacaccacttcagcattatatatttccttctggtggtgatggatta
tacttagtggttgatgaaaaagggaagtttcgtgaggatagttttcagaaagctttgaat
gctcttgttccagccaatgaaggggataagaaaagagagaacggcaagtggcagaagggt
ctggttgttggcaaatctggtgaagatagtgacatattcaagatggttaaaatgattatt
cagcggcaatatgatcctgtaatatgtttcagcttcagcaaaagagaatgtgaatttcta
gcaatgcagatggctaaaatggatcttaataatgatgatgagaaggcgaatattgaaact
attttttggagtgctatggacattttatcggatgatgataaaaagctgccgcaggtttca
aatatgcttcccctattgaaacgtggaattggtgtgcatcattctggtttgcttcctata
ttgaaagaagtgattgaaatcctgttccaagaaggattcatcaagtgtttgtttgccaca
gagaccttcagtataggtctgaacatgcctgcaaaaactgttgtcttcacaaatgttcgc
aaatttgatggagacaagtttaggtggatatccagtggtgagtatattcagatgagtggt
cgtgctggtcgtcgggggattgatgaacgtgggatctgcatccttatggttgatgagaag
cttgaacctcctacagcgaaatccatgctaaaaggaagtgctgatgcattaaacagtgcc
ttccatttaagctataacatgcttttaaatcaaatacggtgtaaagatgctgatcctaaa
aatcttctccgggactcgttctatcaatttcaagcagatcgtgcaattcctgatcttgag
aaacaagcaaaaattcttgaagaggagagagactcaattgtgattgaagaagaagatagc
cttgagagatactatagtcttctagaacaatataagagcttaaagagggatgtacgtaac
attgttttatctccaaaatattgcttgccattcttgcaacctggtaggcttgtatgcatc
gagtgtacgaaggttgatgatgatgttccaaccttctccatcaaagaagaggtcacatgg
ggagtaataattaattttgaaagggtgaaaggtctttctgaagatgacgcaaacaaaaaa
ccggaggatgcgaactatacgatagatgtacttacgagatgtatagtgcagaaggatgag
gttggtagaaagacgattaaaattgtcccgttgaagaatgctggggaaccagctgttgtt
tctcttcctttgtcccagattgatagtttgagcagtgtccgtcttgtgataccaaaggat
cttttgccttcggaagttagagaaaatacactaaagaaggtttctgaagttctcaataga
ttttcaagagagggcatgcctctcttacacccggaagatgacatgaaggttcaaagtagc
acgtacaggaaggcttcaagtaagcttgaagccttggagagtctgtttgaagagcacaag
atagcaacgtctcccctcataaaagaaaagcttatggttttgcataagaagaaagaactt
actggcaaaatcagatcaattaagagagcaatgcgtacttcaaaagccttagcattcaaa
gatgaacttaaagcaaggaaaagagttctcaggagactcagatacatcacaagtgaggat
gtcctggagtctaaagggaatgttgcctgtttaatcagcagcgcagatgagttgaccttg
actgaattgatgtttaatgggaccttcgagaaaattaaagtcgaggagcttgtcactctt
ctctcttgttttgtgtggcaagaaaagcttcaggatactcagaagcccagggaagagcta
gagttgctctttgcgcagttacaagatacagctcgaagggttgcaaaagttcagctcgag
agcaaggtccaaatagacgttgagaactttgtgagttcattccggcctgatatcatggag
gctgtctatgcgtgggctacaggatctaagttttatgagataatggagattactcaggtg
tttgagggcagtttaatcagggctatcaggagactggaggaagttcttcagcagcttata
ctagctgcacaaaaggttggggatgaagagcatgaggcaaaatttaaagaggctgtagcc
aagatcaagagggacattgtctttgcagcatctctgtatttgtag
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