Nicotiana tomentosiformis: 104087516
Help
Entry
104087516 CDS
T05025
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104087516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104087516
03012 Translation factors [BR:
nto03012
]
104087516
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104087516
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104087516
Translation factors [BR:
nto03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104087516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
Dicer_dimer
nSTAND3
AAA_19
AAA_22
ATPase
TFIIA
NPHP3_N
AAA_11
PhoH
T2SSE
NACHT
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-GeneID:
104087516
NCBI-ProteinID:
XP_070055787
LinkDB
All DBs
Position
4:complement(29053813..29079315)
Genome browser
AA seq
1183 aa
AA seq
DB search
MSLYSLQVFSHYRTLIKPLSIPPPSSSLTMKDRPPPPSSVYVPPHQRLLRSVITAVPPQS
GGFRSTAIDPKPNPNAQKQIQQPQQMRVMQQKRTSRFDEVLLSQEVSACDIDLTPYQGAA
ISDNTEAWKWKLTALLRDKDKQEVLSREKKDRRDYEQIAALASKMGLYSNLYSKVVVVSK
LPLPNYRFDLDDKRPQREVILPPGLPRRIDSFLGEYLSHKPTSVAVLSRSSSNGSIATDE
GLFEQPELLPQSKASMENILWRRSMQMRAEQQTWQESPEGRKMLEFRGSLPAYKEKEAIL
SAISQNQVVIISGETGCGKTTQIPQFILESEIESAHGAMCSIICTQPRRISAMTVSERIA
AERGELLGETVGYKVRLEGVKGRDTHLLFCTTGILLRRLLIDRNLKGITHVIVDEIHERG
INEDFLLIVLKDLLPRRPELRLILMSATLDAKLFSSYFGGAPLVHIPGFTYPVRTHFLEN
ILEMSGYRLTPDNQIDDYGQERTWKMNKQAPRKRKSQIASAVEDALRAADFKEFSPVTRE
SLSCWNPDCIGFNLIEHILCHICENERPGAVLVFMTGWDDINSLKDKLQCHPILGNTSRV
LLLACHGSMASTEQRLIFDKPEDGVRKIVLATNIAETSITIDDVVYVIDCGKAKETSYDA
LNNTPCLLPTWISKVSARQRRGRAGRVHPGECYHLYPRCVYDAFADYQFPEILRTPLQSL
CLQIKSLKLGSISEFLSRALQSPELLAVQKAIEYLKIIGALDESENLTVLGRYLTMLPME
PKLGKMLILGATLNCLEPILTIVAGLSVRDPFLTPLDKKDLADAAKAHFSRDYSDHLALV
RAYEGWKDCERDLAGYEYCWKNFLSAQSMKAIDSLRREFYSLLKDTGLVDSNNTIYNSWS
YDEHLLRAIICYGLYPGICSVLHNEKSFSLKTMEDGQVLLHSNSINARDSRIPYPWLIFN
EKIKVNSVFLRDSTAISDSVLLLFGGTISKGEVDGHLKMLGGYLDFYMSPTIAEMYRSLR
RELDELIHTKLLNPRMDVHSYHELLSAIRLLISEDQCGGRFVFSRQVLLTSKPCAAAAPP
APMSRTESGPGGENSKSQLQTLLNRAGYATPTYKTRQLNNNQFQATVEFNGMQIMGQPCN
NKKQAEKDAAAEALQWLLEGHRADPDYIERMSLFLKKSKTEHR
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgtattctctccaagttttctcacattacagaacccttattaaacccttgagc
attccaccaccgtcgtcgtcgttgacgatgaaggaccggcctccaccgccttcgtccgtt
tacgtccctccacatcaacgcctcctccgttcagtaatcactgctgttccgccacaatcc
ggcggcttccgttctacagcaatcgatcccaagcctaatccgaacgctcagaagcaaatt
cagcagccacaacaaatgcgagtgatgcaacagaagagaacttcacgatttgacgaggtt
ttactttctcaggaagtttccgcttgtgatattgaccttacaccctatcagggtgctgcc
atatctgacaacactgaagcatggaaatggaagctcactgctctgttacgcgacaaggat
aaacaagaggtgctctcaagggagaaaaaggataggcgtgattatgagcaaatagcagct
ttagcgagcaaaatgggtttatatagcaacctatattcaaaagtagttgttgtcagcaag
cttccattaccaaactacaggtttgatttggatgataagcgtcctcagagagaggtgatc
ctgcctccgggtttgccaagacgaatagattcttttcttggagaatacttgtctcataag
ccaacgagcgtggctgtactttcacgatcaagcagtaatggtagtatagctaccgatgag
ggtctatttgagcagccagagttactacctcaaagtaaggcttccatggagaacatcctt
tggcgtaggagcatgcaaatgcgagctgagcagcaaacttggcaggaatcaccagaaggt
aggaagatgctggaatttcgtggtagtctacctgcatataaggaaaaagaagcaatatta
agtgccatttcgcaaaaccaggtggttattatctcaggtgaaactggctgtgggaagacc
acacagattccccaatttattttagagtctgaaattgagtctgctcacggagccatgtgc
agtatcatatgtactcagccaagaagaatatctgctatgactgtatctgaaagaattgct
gcagagagaggggagttgttgggtgaaacagttggatataaagtgaggctagaaggtgtt
aaagggagggatactcacctcctcttctgtaccactggtatcttgttgagaagactacta
attgacagaaatctgaagggcatcacacatgtaatcgtggacgagattcatgaacgtgga
ataaatgaagactttctgctaatagttctaaaggatttactccctcgccggccagagtta
aggttgattttgatgagtgccaccttagatgcaaagcttttctcttcatactttggtggg
gctccgctggtccacattccgggatttacatatcccgttcgcactcatttcctcgaaaat
attctggagatgtcgggatacagattgacgccagacaatcagattgatgattatggtcag
gagagaacgtggaaaatgaacaagcaagctccaagaaaaaggaagagccagattgcttct
gctgttgaggatgccctcagagctgctgatttcaaagaatttagccctgtgacacgggag
tctttgtcttgttggaatcctgattgtataggcttcaatcttatagaacatattctatgc
catatttgtgaaaatgaaaggcctggtgctgttttagtttttatgactggttgggatgat
ataaattctctgaaggataagctacaatgtcatcctatcttgggaaataccagccgtgtt
ctattgctggcatgccatggttctatggctagtacggagcagaggttaatttttgacaag
cctgaagatggagtgaggaagatagtgttggctacaaatattgctgaaaccagtatcaca
attgatgacgtagtttatgttattgactgtggcaaggcaaaagagacgtcatatgatgca
cttaataatactccttgtttgcttcctacttggatttcaaaggtttcagctcgacaaaga
aggggaagagccggacgtgttcatcctggagaatgctatcatctttatcccagatgtgtg
tatgatgcttttgctgattatcaatttccagaaattctgaggacccctttgcaatccctt
tgtttgcaaattaaaagtttaaaactcggtagcatctctgagttcctttcaagggctttg
caatcccctgagttattagcggttcaaaaagctattgagtatctgaaaattattggggct
ttagatgagagtgaaaatttgactgttctaggacgttacttaacgatgcttccaatggag
cctaaactcggaaaaatgcttatacttggtgcaactttgaattgtttggagccgatatta
actatcgttgctggtcttagtgtccgagatcccttcttgacaccgcttgacaagaaagat
cttgcggacgctgctaaggctcatttttcacgcgattatagtgaccatcttgctcttgtt
cgagcatatgagggctggaaggattgtgaaagagacctagctggatatgagtactgctgg
aagaattttctgtctgcacagtctatgaaagctattgattctcttcgcagggagttttac
tctttgctgaaggatactggtcttgttgacagcaataatactatctataattcttggagt
tacgatgagcacctccttcgagcaattatctgctatgggttgtatcctggaatctgttct
gtcctgcataatgagaagtcattttcgttgaaaacaatggaagatggtcaggtgctttta
cactcgaactccattaatgcccgggactccaggataccatatccctggctgatcttcaat
gaaaagatcaaagtgaactctgtctttctccgggattccacagctatctccgactcagtg
ctgcttctatttggaggaaccatctcaaaaggagaagtggacggtcacttgaaaatgtta
ggtggatacttagacttctatatgagccctactatagcagaaatgtatagaagtctaaga
agagagcttgatgagttaattcatactaaactcctgaatcccaggatggatgtacatagt
tatcatgaacttctgtcagcaatacggttgcttatctcagaggatcaatgcggtggcaga
tttgtttttagtcgtcaggttttactaacttccaagccatgtgctgcagcagcaccacca
gctccgatgtcaaggactgaaagtggtccaggaggtgaaaattctaagtctcagctacag
acgttgctgaatcgagcagggtatgcaacaccaacctacaagacaaggcaacttaataac
aatcagtttcaagcaactgtagagttcaatgggatgcagataatgggacagccttgcaac
aacaaaaaacaagctgaaaaagatgcagcagctgaggctctgcaatggttgttggaaggg
caccgtgcagatcctgattacattgagcggatgtctctgtttctgaaaaagagcaagaca
gagcatagatga
DBGET
integrated database retrieval system
