Nicotiana tomentosiformis: 104087701
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Entry
104087701 CDS
T05025
Name
(RefSeq) uncharacterized protein
KO
K24155
rabconnectin-3a
Organism
nto
Nicotiana tomentosiformis
Pathway
nto04142
Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
104087701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nto04131
]
104087701
Membrane trafficking [BR:
nto04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
104087701
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
104087701
RAVE complex
104087701
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_WDHD1_1st
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_WDR5
WDR55
Beta-prop_WDR3_2nd
Beta-prop_EML
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_TEP1_C
WD40_Gbeta
Beta-prop_Aladin
Motif
Other DBs
NCBI-GeneID:
104087701
NCBI-ProteinID:
XP_009590544
LinkDB
All DBs
Position
1:42312640..42335251
Genome browser
AA seq
2520 aa
AA seq
DB search
MESHSISNCDSVDDVVSQLPLQLIKSEIIPPAPNRSKSPSEFEPAIDWQPNFVGYSWIAY
GASSLLVIRQFPNPLSQTETVTGTVFQQVLELSIDGSGTVSAVAWSPVTPSSGDLAAALD
NCIGLFSYNSDASHSSFCWSQTSTLVQSTKVESITWTGSGDGIVSGGIELILWRKKERSW
EMAWRFKPELPQTLISATWSIEGPLAAAPSHSLHFEGSGSRIHAGHKCVLVCQRDADSGH
LEAMLHHPLPVSMIQWRPSLVTQSTRDGSYSRRLVLLTCCLDGAVRLWNEIDDGRVRKVG
KDSNDHKLSKFSFRVVAVVEVNQALNGMLGLDVSVRWATDINGIITVNGEAVTYSSSDEH
QQSNAGRCEWLIAVGPQTTLTFWAIHCLDDFSPLRAPRVTLWKRKESNSPNEVPRGLLLN
KVLIMRNQVFGPPTVCSFISLLPSNSLAWTQLYSSKFPKGEEVSSELSSTDESPPNKCQT
ECLLSLCARGLSNADSHCSKILQVAIHPCLSELEFAASLDTDGKLLFWLFSSASNTIVGL
PTLSPSWELFGKGAIALPQQPKYTSLRWAPTLLSEERILIIGHADGIDLSVVKAVKTEEL
EIVCDKICTIPLTAGSHGQGPDSVFSIPLPSTCNKTIINSFLLFAVWEKGFQALSWKIDL
HHYDLSETRCGCSFDSANTLQNNIWKFESSYSGYTYLVSVEPCSSVLPEPHDNNKISSYA
VICPTNSGLTEEIFANNLYSNYFAYHMVTGCLDGSLLLWRSVPAGSSNSQWFLVGRIALQ
QGPILAISASVCGRKIATISKGHLSTSAIHIWECARIEDAGSFILEDTLYFDAEVVASNW
LTIGNGQFLLGVCSRGKVQVYTQKRCGGQCNLEPEKSFEGNIWVCLAASDTNPTIQDFFW
GPKAMIVVVHDEYISLFSKFSYFMNKKLLPQLGGKVCKESSVCHYGSNKVPIFYGHENYD
YAQYQANFPLKMEVVNETSLFSSLTKSKEGFTSVKNGIWSILEIAELVGGSLPLVHPEAI
LVNLLSGNWKRAYVALQCLSKHVASSKLSAEICCLRAFSGLIFPISLSNYLEGHVLLSTG
EKSFQWGGPSEVQKGFLQASSSWGYAASDNALSISPARSEITDFLEAFDKLHNFATISST
EMMQIRAAIHLLDEVSNMQSTSAYNSLDGPGRRFWVSVRFQQLYFVQRFRRLPSEGELVV
YSGLIGWAFHSDCQENLFDSLLSKEPSWQEMRDMGVGLWYTSMAQLRVKMEKLARQQYLK
NRDPKACALLYIALNRLHVLAGLFKISKDEKDKPLVAFLSRNFQEDKNKGAALKNAYVLL
GKHQLELAIAFFLLGGDTTSAVTVCVKNLGDEQLALVICRLVEGYGGTLEHYLISKMLLP
SALAKGDYWLVSVLEWILGKPSHAFLRMLAFPTGSLNDKSIFSSRQPAFLDPSVGDFCLM
LAAKTTMKNAIGEQNAAALSRWAILMRATALSRCGLPLDALECLASSVSIIGGSTGGSVP
DNVDSGYQHEMLSAMLNETSSNWLSLDVALRIESHMRSDLSMQYLSKMLRRHPSWVNHDM
TCLQGHMDTLSENEEYKLSVGAFQDELMTTIASFQLKFSLIPLHLMYLIFLSFCNCGLAY
TGCYLLQDYINKYLSMEQGHELEGCSLYAFLPKLFLELSGELFYISARYIIMCSMDCFCL
KSFALRSNGADENIYHAVLELYKRRLSWSLWCLRATMQFSSVSSAENFVGTHFTVLDLSE
YLLLFASALVQRNYSVLLRIVKPLLMARTSDETGIKDIQKLLCETREMVAHDLPIHDAGS
SVRNKNQMSQAQFGDVMLSVPEERWHVMVASFWGYVSSFLKHKLNVLSRKHEESGLFLPP
GRHSSVSTSLNCVNGSDVSTHNGMVPELLAKLIKIICTHISSYCVNQFASVLLERDPGAT
ALFWSEDYPSQHKAPDAKLCHRNNDLDKLTGEDELSAFEALWDICSELKKANQGFVLQDQ
KFLQHTLLKSFKGWNEMYPSIVRECEVEETYDREDRFGSPRSAAGSPLACLSPNNHPFQS
SGGKDTNHTKKVLPFRSPIEIYKRSGELLEALCINSIDQHEAALASNRKGLLFFNWEDGL
PCANRSDNVWAEADWPHNGWAGFESTPIPTCVSPGVGLGSKKGTHLGLGGATVGAGFLAG
PTFGLPGYANTAGSSLGWGVQEDFDEFLDPPATVENVRTRAFSTHPSRPFFLVGSSNTHI
YLWEFGKDRATATYGVLPAANVPPPYALASVSAVKFDHCGHRFVSAASDGTVCTWQLEVG
GRSNVRPTESSLCFNNYTSDVTYVTSSGSIIAAAGYSSSGVNVVIWDTLAPPATSRASIM
CHEGGARSLAVFDNDIGSGSVSPLIVTGGKGGDVGLHDFRYIATGKTKRQKHTEIGDHGV
NSMVDMQKKTGDQNRNGMLWYIPKAHTGSVSKISTIPHTSFFLTGSKDGDVKLWDAKNAK
LVFHWPKLHERHTFLQPSSRGFGGVVQAAVTDIQIVSHGFLTCGGDGAVKLVMLNDLLRP
NT seq
7563 nt
NT seq
+upstream
nt +downstream
nt
atggagagtcacagtatcagtaactgtgactcagtagacgacgtcgtttcgcagttacca
cttcagctgatcaaatcggagatcatacctccggcaccgaaccgatcaaaatctccatcc
gaattcgagccagcaattgactggcagccgaacttcgttggctactcatggatcgcctac
ggtgcctcgtctctcctcgtcatacgtcaattccctaaccctctctcacaaactgagact
gtaacaggcacagtttttcagcaggttctcgagctgtcaatcgacggctctggcactgtc
tccgccgtcgcttggtctccagtgacgccttcttctggagaccttgccgccgcacttgat
aactgcattggattgttctcttacaattctgacgcttctcatagttctttttgttggagc
cagacctcaacactagtacaatctacaaaggtggagtcaatcacatggacgggatcagga
gatgggatagtttcaggtggcattgaattgatattgtggagaaagaaggagaggtcatgg
gaaatggcttggagatttaaaccagaactgcctcagactctgatttctgctacttggtca
attgaaggacctttggctgctgcaccttcacatagtttgcactttgaaggttcgggttct
cgaatacatgcaggacacaaatgtgttttggtatgtcaaagagatgcagactccggacat
ttagaagctatgctacaccatccgttaccagtttctatgattcagtggagaccatcttta
gttacacagtcaactagagatggcagctattctaggaggttggtgttattaacatgctgt
ttagatggagctgtaaggctctggaatgagattgatgatgggagggttagaaaagttggc
aaggatagtaatgatcacaaactgagtaaattctcttttcgtgttgtcgctgtagttgag
gtaaaccaagcattaaatggaatgctgggcttggatgtgtctgtaagatgggcaacagat
attaatggtataataactgtcaatggggaagctgtgacatattcctcatcagatgaacac
caacaaagcaatgctggtaggtgtgaatggttgattgccgtaggtcctcaaacgacactg
accttttgggctattcattgtcttgatgatttttctccattgagagccccaagggtgaca
ttgtggaaaagaaaagagtcgaacagtcctaacgaggtgccaaggggattgctcttaaat
aaagtccttattatgagaaatcaggtctttggtccaccaacagtgtgttcttttattagt
ctattaccaagtaactctctagcctggacgcagttatactcttcaaaattccccaaaggt
gaagaggtatcttcagaactgagtagcacagacgagtcgcctccaaataaatgtcagact
gaatgtttactatcattatgtgcaaggggactttcaaatgcagacagtcactgcagtaaa
attctgcaagttgcaattcatccttgtttatctgagttggaatttgctgcctccctggac
actgatggaaagctcctcttttggttgttttcttctgcttcaaatactattgtgggcctc
ccaactttgagcccatcttgggagctgtttggaaaaggcgcgattgcactccctcaacaa
cccaagtatacaagcttaagatgggcacccactctgttaagtgaagaacgtattcttatc
attggacatgcagatggaatagatttatcagtagttaaggctgtgaaaactgaagaattg
gaaatagtttgtgacaaaatatgtactataccacttaccgctggaagtcatggacagggg
ccggatagcgtcttttcaattccgttgccttccacttgtaacaaaactattataaatagc
tttttgctgtttgctgtgtgggaaaaaggctttcaggcattatcgtggaaaattgacctt
catcactatgatttgtctgaaacacgctgtggttgcagttttgacagtgcaaacaccttg
cagaacaatatatggaaatttgagagtagttattctggttatacataccttgtctctgtt
gaaccttgttcatcagttttgccagaacctcatgacaataataagatttcaagttatgct
gtgatctgtcccacaaactctggtttaactgaagaaatttttgctaataatttatatagc
aactactttgcttatcatatggtcactggttgtcttgatggtagcttgctattatggaga
agtgtgcctgctgggagctcgaattctcaatggtttcttgttggtaggattgctttgcag
cagggtcctattttggctatatctgcaagtgtctgtggcagaaaaattgcaactatctca
aaaggtcacttaagtacttctgctattcatatatgggaatgtgcgcgaattgaggacgct
ggcagctttatactagaagacactttatattttgatgcagaggttgttgcttcaaattgg
ttgacgatagggaatggtcagtttttacttggagtttgctcaagaggtaaggtgcaggtt
tatactcaaaagcggtgtggaggtcaatgcaatttggaaccggaaaaatcatttgaaggc
aacatctgggtatgtcttgcagcaagtgatactaaccctaccattcaagacttcttttgg
ggacccaaagccatgatagtggttgttcatgatgaatatatttctctatttagcaagttc
tcatactttatgaacaagaaacttctgccccaacttggtggaaaagtttgcaaggaaagt
tctgtctgtcactatggttctaataaagtgccaatattttatggtcatgaaaattatgat
tatgcacagtatcaggctaatttccccttgaaaatggaagtggtcaatgagacttcactg
tttagtagcttgacaaaatctaaagaaggctttacttctgttaaaaatgggatctggagc
attttagagatagcagaacttgtagggggatctcttcctcttgttcacccggaggcaatt
cttgtaaacttactttcaggtaattggaaacgtgcatatgtagctctgcagtgtctcagt
aaacacgtagcttcctcaaaattatcggcggaaatatgctgccttcgagccttcagtggt
ttaatatttcccatttcgttgtcaaactatcttgaaggacatgtcttgttaagcactggg
gagaagtcatttcagtggggtggaccttcagaggttcaaaaaggtttcctccaagcttcc
tcaagctggggatatgctgcatctgataatgcgctctctatctctcctgcaagatctgaa
attactgactttctagaagcctttgataaacttcataattttgcaactatatcttccact
gaaatgatgcaaattcgtgctgctattcatcttctagatgaagttagcaatatgcagtca
acttctgcctataatagccttgatggacctggtcgaaggttttgggtttcagtgaggttt
cagcagctatattttgttcaacgatttcgcagactgccatcagaaggtgagctggttgta
tactcggggctgattggatgggctttccattctgattgccaagagaatttgtttgattct
ctgttatctaaggaaccatcttggcaagaaatgcgcgatatgggtgttggattatggtat
acaagtatggcacaactgcgagtgaagatggaaaagctggcaagacagcaatatttgaag
aatagagatcccaaggcatgtgcacttctgtatattgcattgaataggcttcatgtttta
gcgggccttttcaagattagcaaagacgagaaagacaaacctctggtggcatttctttca
cgcaattttcaggaagataaaaataagggagctgctttaaagaatgcatacgtgttactg
ggaaaacatcagttggagcttgcaattgctttctttttgcttggaggagataccacatct
gctgtcactgtttgtgtgaagaatcttggggatgagcagctcgcgcttgtaatttgccga
cttgttgaaggttatggtggaacgctagagcattaccttatttcgaaaatgcttcttcca
tctgctcttgccaaaggtgactactggcttgtaagcgtactggagtggatattaggaaaa
ccctcacatgcttttcttagaatgcttgctttcccaacgggttccttgaacgataagtca
atattctcatcccgtcaacctgccttcttagatccaagcgttggtgacttttgcttaatg
ttagcagccaaaactaccatgaagaatgctattggggagcaaaatgctgctgccttgagt
agatgggcgatcttgatgagggccactgccttaagcagatgcggtctacctcttgatgct
ttggaatgccttgcatcttctgtgagcatcattggtggttcaactggaggaagtgtgcct
gataatgtggactctggataccagcatgaaatgctgagtgcaatgcttaatgaaacttca
tcaaactggctatcattggatgtggctttacggatagaatcacacatgagatcagacttg
tctatgcaatacttgtcaaagatgttaaggagacatccaagctgggtaaaccatgatatg
acttgtcttcagggacacatggatactttatcagagaatgaagaatacaagctttcagtt
ggagcttttcaagatgaattgatgacgacaattgcatcctttcaactgaagttctcctta
attcctctacatcttatgtacttgatttttttgtcattttgcaactgtggtttggcgtat
acaggatgctacttgttgcaagactacataaataaatatctgtcgatggagcaaggccat
gaacttgagggttgctcattgtatgctttccttcccaagctatttcttgaactatctgga
gaattattttatatttctgcaagatacatcattatgtgtagcatggactgtttctgtttg
aagtcattcgcccttaggagtaatggagctgatgaaaatatttatcacgctgttttagag
ctgtataaaaggaggttgtcttggtcattatggtgtcttagagccacgatgcagttttct
tcagtttcttctgcagaaaattttgtggggacacatttcactgtccttgatttatcagag
tatttgttactgtttgcatctgctttggtacaaagaaattacagtgttcttctccggatt
gtgaagcctctcttgatggcaagaacttcagacgagacaggcataaaggatatacaaaaa
ctgctttgtgagactcgagaaatggtggctcatgatttacctattcatgatgctggatct
tctgttcggaacaagaatcaaatgtcacaggcacaatttggggatgttatgttgtctgtt
ccggaagagagatggcatgtcatggttgcttctttttggggatatgtatctagtttttta
aaacacaagctaaatgtgctatctcggaaacatgaggaaagcggtttgtttctacctcca
ggcagacattccagtgtatccacttcattaaattgtgtaaatggcagcgatgtctcaacc
cacaacgggatggttccagaacttctggcgaagttaataaagatcatatgtactcacatc
tcttcttactgtgtgaatcagtttgcatccgtcctgctggagagggatccaggtgcaact
gctcttttctggtctgaagattatccgtcccaacataaagcgccagatgctaaactttgt
catagaaataacgatctggataagttgactggtgaagatgaattatcagcatttgaggca
ttatgggatatttgttctgagcttaagaaagctaatcagggatttgtgcttcaagaccag
aaatttttacagcatactttgctaaagtccttcaaaggatggaatgaaatgtaccccagc
attgtaagagagtgtgaagttgaggaaacttatgacagagaagataggtttggtagtcca
agaagtgcagctggatctcctcttgcttgtttgtcaccaaataatcatcctttccaaagt
tctgggggaaaagatacgaaccatacaaagaaggttttgccttttcgtagtccgatagag
atatataagagaagtggagaacttttggaggctttgtgcatcaactccattgatcaacat
gaagctgctcttgctagcaatcggaagggcttattattcttcaattgggaagatggactt
ccttgtgcgaacagatctgataatgtctgggcagaagctgattggccacataatggatgg
gcgggattcgaatctacaccaattcctacttgcgtctctcctggagtgggtctggggagt
aaaaagggcacacacctcgggttaggtggagcaactgttggcgcagggtttctggcagga
cctacatttgggcttccaggttatgccaatacggctggatccagtctcggctggggagtt
caagaggattttgatgaatttcttgaccctcctgccacagtagaaaatgttaggacaagg
gcattctcaactcacccttcaaggccttttttcttggttggctcgagcaatacacacata
tatttatgggagtttggcaaagatagagctaccgcgacatatggagtacttcctgctgca
aatgtccctccaccatatgctcttgcttctgtatctgccgtgaagtttgatcattgtggt
cacagatttgtgtctgctgcttcagatggtactgtgtgtacgtggcagcttgaagttgga
ggcaggagtaacgttcggccaacagaatcctctctttgctttaataattatacatcggat
gtcacatatgttacgtcaagtggttcaatcatagctgccgcagggtatagctccagtggt
gttaacgttgtcatatgggacacacttgctccaccagcaacatctcgggcctccataatg
tgtcacgaaggaggtgcgcgctctcttgcagtgtttgataatgatataggaagtggttct
gtttcccctctcattgtgacgggtgggaaaggtggtgatgttggacttcatgatttccgg
tacatagctactggaaagacaaaaaggcagaagcatacagaaattggtgatcatggtgtc
aactccatggttgacatgcagaagaaaaccggtgatcagaatcgtaatgggatgctctgg
tatattccgaaggctcacacagggagtgtttccaaaatatctaccataccacataccagc
tttttcttgacgggaagtaaagatggagatgtaaaactttgggatgccaaaaatgcgaaa
ctagtatttcattggccaaaattgcatgaaagacacaccttcttgcagccaagctcccgt
ggttttggtggtgtggtacaggcagctgttacagatattcaaattgtttctcatggtttt
cttacatgtggtggagatggtgccgtaaaacttgtgatgctcaatgatctcttaaggccg
tga
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integrated database retrieval system
