Nicotiana tomentosiformis: 104087904
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Entry
104087904 CDS
T05025
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38-like
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03013
Nucleocytoplasmic transport
nto03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104087904
03015 mRNA surveillance pathway
104087904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104087904
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104087904
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
104087904
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Thi4
Motif
Other DBs
NCBI-GeneID:
104087904
NCBI-ProteinID:
XP_009590777
LinkDB
All DBs
Position
2:27522411..27530994
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AA seq
498 aa
AA seq
DB search
MADSSNTSSSTAATTTANPPAIRSWADEADEIDQAEKSSAANENDSAEPQIGSLQIDETK
RVKNSTLDDPEDSRIEAVTSGDTLYKSAKRFEDLNLSPELLKGLYVEMKFERPSKIQEIS
LPMILTPPYKNLIAQAHNGSGKTTCFVLGMLSRVDPKLAAPQALCICPTRELAIQNMEVL
LKMGKFTGITSELAIPADAANYIPVSKRPPVSAQVVIGTPGTINKWVTARKLGMSCMKIL
VFDEADHMLAETGFQDDSIRIMKAIVKASADSQVLLFSATFGENVKAFVTKIVRDLFVKD
YNQMFVKKEELSLDSVKQYKVQCPDELSKVMVIKDKILELGQKVGQTIIFVRTKNGASML
HKSLVDYGYEVTTIQGALKQEDRDKIIKEFKEGLTQVLISTDLLARGFDQSQVNLVVNYD
LPVRHESPSEPDHEVYLHRIGRAGRFGRKGAIFNLLCNDRDSMLMSKIENHFNSQVTEIA
SWRSDEDFENALKKAGLL
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggctgacagctcaaatacttccagtagcaccgccgcaactacgacggctaacccgccg
gcaatcagaagctgggcagacgaagccgacgagatcgatcaagccgagaagtcctcagcc
gctaatgaaaacgatagcgccgagccccaaatcggatctctacaaatcgatgagaccaaa
agagtcaaaaattccactctcgatgatccagaagattccagaatagaagccgttacttct
ggcgacactctgtacaaatcagctaagagatttgaggatttgaacttatctccggagtta
ttgaaaggattatatgtagagatgaagtttgagcgacctagtaaaattcaagagattagt
ttgcctatgattcttacgccgccctacaagaatctaattgctcaggctcataatggttct
ggtaaaactacttgctttgtgcttgggatgttgagtcgggttgaccctaagcttgctgcc
cctcaagctctctgtatctgcccaaccagagaattagcaattcagaatatggaggttctg
ttgaagatggggaagttcactggtataacatcagagttagctatcccagcagatgcagcc
aattacataccagtttcaaagcggcccccggtttcagcacaagtagtaattggcacaccc
ggaactataaataagtgggtgacagcaaggaaactgggcatgagttgcatgaaaattctt
gtatttgatgaagcggaccacatgttggctgagactggttttcaggatgattccataaga
ataatgaaggcaattgtcaaagccagtgctgacagccaggtgcttctgttttctgcaact
tttggggaaaatgtaaaagcctttgtgacaaaaattgttagagatcttttcgtgaaagat
tacaaccagatgtttgtgaagaaagaagaactttcgctggattcagtgaagcagtataaa
gtgcagtgtccggatgaactttcaaaagtcatggtgattaaagacaaaatacttgaacta
ggacagaaggtggggcagacaattatatttgttcgtacaaaaaacggtgcgagtatgttg
cataaatcattggttgactatggatatgaagtgacaacaattcaaggtgctctgaagcaa
gaagatagagacaaaataatcaaggagttcaaagaaggattgacacaagttcttatatca
actgatcttcttgctcgtggatttgaccaatctcaggttaatttggtggttaattatgat
ctcccggtgagacatgagagtccatcagagccagatcatgaggtatacttgcatcggatt
ggtagagctgggcgttttggccgcaaaggtgccatattcaacttgctatgcaatgaccgg
gacagcatgctaatgtcaaagattgagaatcatttcaacagtcaagtgacggagattgcc
tcatggaggagcgatgaagattttgagaatgctctgaagaaagctggcttgctctaa
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