Nicotiana tomentosiformis: 104088046
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Entry
104088046 CDS
T05025
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 isoform X1
KO
K28108
shortage in chiasmata 1
Organism
nto
Nicotiana tomentosiformis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nto03036
]
104088046
Chromosome and associated proteins [BR:
nto03036
]
Eukaryotic type
Meiosis-specific proteins
Others
104088046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cauli_VI
Motif
Other DBs
NCBI-GeneID:
104088046
NCBI-ProteinID:
XP_009590945
LinkDB
All DBs
Position
3:complement(83180670..83192034)
Genome browser
AA seq
1628 aa
AA seq
DB search
MRTRFLCTDYFNSTPISARDFLRLPLSPHLTDPNTSKFEDINFSDGVSTLSIDVEIEKFP
IETALSSFFADVLPHNIDVELSEFADPQPFASCSSEVQTSKTTNSEGTIVSYSKGKDNLE
MVQLEIRVLDTSWLPLLEDIPYFGKENLSIPSHSDGENKLDMPGLEVWLPDSPEILQSIC
SVDDISSVALLEKSADLMEDGAFCQGQYHSSTDVFPHLEVDEAGLVIVSDNSVKEKVLSI
ENSELHCETPGSEGMGSSNELLGSTKFDTFQHLSDGSFAMGCCEVEVPCLNFSAEMDLIS
IIELEKNSVIHESIENDGLIWVASPIIFDELQFFDSDLFSLREFQSEAKVDIDKDTCDLM
LREAENFRNFDELLVSHELIPVDNSFRSLPVPPVPENGNIKSLYLCIKEILAELEPQSPS
MSDGLYLDWHFLEEEKCEYREDCFNLLREIDANDIAFCLNFSDNEMLVSDYFFSSDSPQE
PNRAESKEMLSLPSNGIPISPIPYSIEVSTKLLNDGKFPTEGVSSQCIARKASSFGDSRS
KFNDLDFFLNRKEYSRGKDYKPADSSIDTSAMDQISFLSSSATTLLQPQWNIKVHQILLS
TDILLLIDDLKKIFLAIFERQRELIEIQDPSQAVDDDAILRLPKKKLINLIKKRGICRSS
LFQDGDKTMSLVTLSAIKQMVWYLCYYDLHTTYLYIEKLSRSLQGLESKLDFIYNIVKDV
HQKGENDIHKFHPSLSVIKDILETFKSKDSSKILIVAEPVFWWSLKKLLTSMNIAFFQQQ
NGQKDDFYKLEDASMQMIHESDCCLVTREHLFASFPFEKFEIILEYGGSQESSKVSSILP
KSDRVPPLHFLKVELEDPSVAKALCDGVDMPNINEASVEGGPHSCSTLNEIDVTFEELLN
YLPVEKNLKGGSMEALLGNEACSTAAEDAVFSSKSEQNRRSIDGCPETIIIVNTHNFDTE
MVISRRSTYQKILAFEKKGVQVIERDLRQPVDIIVSASACLAWYDCKNIAKKATASEEAF
SCLPQCVENIAANILTSLSFAFSGCILVFEGESHFIAGIMESSDELYAAAASLGMDIRIF
YSYSSEMTDEIILSCIELSLMTSRGLYPKMRETQTLAESFLSAFPSINPLSAHAILSSAG
LLVEFLEWTHERRIHAVQKYQVPDESITLLSALSRFGEREDSKSGMTDCSSSVSSAPGSE
SLHFKSNSVGTKRKTTWNIENLNTPTNELFDFDPPRTFSKARLNHPRASGLCDSRISEDT
NFFDEFGNSSLSFDTELCVQRQSLDTNGTEDLFKVTELCDYQMRKDPHMGDELNKLEAPQ
IDVCLRPRERVYVGMMNKLDRKNNYSGNFKEDITDEVIDIDDTPATRKAFRNAKYKSFST
LELAMERSKTGVPKAAKKLFFGASGLQEFPTTGDIDSSPDACTSVRDLGQGSGQGMGQHL
NAGFYHKKSQIKHKKGVTEEGVSEKVKCLSDLTMQDNNTACYGETPLSSARQSTRLQQGS
PWTIEFLNKMREKSRSRQQFLPRDLSAPWYGYPGKSSEVTNRKSPSTIEFYKYQGNSCQE
AGTGRKRPKKCIQLPASTTEKASDRLIPTWTPDDKRAKRVLSFATNGNGGQTNLIWSDKN
SHTLGRRY
NT seq
4887 nt
NT seq
+upstream
nt +downstream
nt
atgcgaactcgatttctctgcacagattacttcaattccactccaatttcagctcgcgat
ttcctccgcctccctctttcgcctcatctcactgacccgaacacctctaaatttgaagac
attaatttttctgacggagtttctactcttagtatcgatgtcgaaatcgagaaatttccg
atcgagacagctctctccagcttcttcgccgatgtccttccgcacaacattgatgttgaa
ctctccgagttcgcagatcctcagcctttcgctagttgcagttccgaggtgcaaacaagc
aaaactacgaactcagaggggactattgtttcctacagcaaggggaaggacaatcttgaa
atggtccaacttgaaattcgggtgctggatacatcctggcttccattgctagaagacatc
ccttattttggaaaggagaacttgtcgattccctctcattcggatggtgaaaataagctg
gatatgcccggtcttgaagtttggctgccagattcccctgagatcctgcaatcaatttgt
tcagtggatgacatctcttctgtggctttactggagaaaagtgctgatttgatggaagat
ggtgctttctgtcaggggcaatatcattctagtacagatgtctttcctcatcttgaagtg
gatgaggcaggtttggttattgtcagtgacaactctgtaaaggagaaagttctaagcatt
gaaaatagtgagcttcactgtgagacgccaggaagtgaaggaatgggtagcagcaatgag
cttttgggttccacaaagtttgacacattccaacacctatcagatggtagtttcgcaatg
ggctgttgtgaagttgaggttccgtgcttgaatttctctgcggagatggatttgataagt
attattgaacttgagaaaaactcggtgatccatgaaagcatagaaaatgatggtctaata
tgggtagcaagcccaatcatttttgatgaattgcagttctttgattcagaccttttttct
ttacgtgaattccagtctgaagcaaaagtagatattgataaagatacatgtgacctaatg
ttgagagaagccgagaatttcaggaactttgatgaattgcttgtttcccatgagctcatc
cctgtggataattctttcagatcattgcctgtgccaccagttcctgagaatggaaatata
aagtcactgtacttgtgtattaaggaaatcctagctgagttggagccgcagtctccctcc
atgtccgatgggttatacttagattggcattttctggaagaagagaaatgcgagtatcga
gaagactgtttcaatttgctgagggagatagatgctaacgacattgccttttgcttgaac
ttcagtgacaatgagatgcttgtatcggactattttttctcaagtgatagtccacaagaa
ccaaacagagcggagagcaaggaaatgctgagtttaccttctaatggcattcctatatct
cccatcccttatagcatagaagtgtcaactaagttgctgaatgatgggaagttcccaact
gaaggagtatcatcccaatgtattgctagaaaagcatcttcatttggtgactccaggtca
aagtttaatgatcttgattttttcttaaatcgtaaggagtatagtagaggcaaagattat
aaaccagctgacagttcaattgatactagtgccatggaccagatcagcttcctctcttct
tctgcaaccacattattgcaacctcaatggaatatcaaggtgcatcaaatattgttatct
actgatattctacttctaattgatgatcttaagaagatctttctagctatctttgaaaga
cagagagagttgattgagattcaggatccatctcaagctgtggacgatgatgctattctt
cgccttccaaagaaaaagctcatcaatttaattaagaaaagaggcatatgcaggtcatct
ttgttccaggatggtgataaaacgatgtcattggtcacattgtctgcaatcaaacagatg
gtttggtacctgtgctactatgatctgcatacaacctatctatacatagaaaagttatcc
aggagcttgcagggattggaatctaaacttgatttcatctacaacatcgtaaaagatgtg
catcaaaagggtgaaaacgatatacataagttccatccatcgctatccgttatcaaggat
atactggagacatttaagagcaaggatagttcaaagatattaattgtggctgagccagtg
ttctggtggtcattgaagaaactattgacgtccatgaatattgcattttttcaacaacag
aatggacagaaggatgatttttacaaattagaagatgccagcatgcaaatgattcacgaa
tcagattgctgtttagtaacccgtgagcatctgtttgcctcatttccatttgagaaattt
gagattatcttggaatatggaggttcacaagaatcatctaaagtatcttccatcttgcca
aagtcagatagagttcctccccttcatttccttaaggtggagctggaggaccccagtgtt
gcaaaagctctttgtgatggtgttgacatgcccaacattaatgaagctagtgtggaagga
ggtcctcactcttgctctactctcaatgagattgacgttacctttgaagaactgctaaat
tatcttccagtggaaaagaacttgaagggtgggagcatggaggcattactgggaaatgaa
gcttgctctactgcagctgaagatgcagtattcagttcaaaatctgagcaaaatcgcaga
agcatagatggctgtcctgagactatcattatagttaacacacacaattttgacacggaa
atggtaatttcaaggagaagtacataccaaaagattcttgcatttgagaagaaaggagtt
caggtcatagagcgtgatttacgtcagcctgtcgatattatagttagtgcatccgcttgc
cttgcttggtatgactgcaaaaacattgcaaagaaagctactgcctccgaagaggctttc
tcttgcttgcctcaatgtgtcgagaatattgcagcaaatattttgacgtcactcagtttt
gctttcagtggctgcattctggtctttgagggagaaagccactttatagcaggaattatg
gagtcatctgatgagctctatgctgctgctgctagcttgggcatggatatacggatcttt
tattcatattcttctgagatgactgatgagatcatattatcgtgcattgaactttcattg
atgacaagcagaggactttatcctaagatgcgtgagacacaaacgctggcagaatcattc
ctttctgcatttccttcaatcaatcctctctcagcacatgcaatattgtcttcagcgggc
ttgcttgttgagtttctggaatggacacatgaacgcagaattcatgcagtccagaagtat
caggttcctgatgaaagcatcacattactaagtgctttgagcagatttggggagcgggag
gattctaaatcgggaatgacagattgctcctcttcagtttcttctgctccaggctctgaa
agtcttcattttaaaagcaactctgtggggacgaaaagaaaaaccacctggaatattgaa
aatcttaatacgcctacaaatgagttgtttgattttgatccaccacgaacattttctaaa
gccagactgaatcatcccagagcatctggcctgtgcgattctcggatttcagaagatacc
aacttttttgatgaatttgggaattctagcttatcatttgacacagaattgtgtgttcaa
agacagtcattagacaccaatgggacagaagatctttttaaggtaactgagctctgcgat
tatcagatgagaaaagatccacatatgggagatgagttaaataaacttgaggctccacaa
attgatgtgtgtttgcgtccaagagagagagtttacgtgggtatgatgaacaaattggac
agaaaaaataactattcaggaaattttaaagaggatatcacagatgaggttattgatatt
gatgatactcctgcaactagaaaagcttttcgtaatgcaaaatacaagtccttttctacc
ctggagcttgcaatggaaaggtccaaaacaggggttcctaaagctgctaaaaaactcttt
tttggagcaagtggtctccaagaattcccaaccactggggatattgactctagcccagat
gcctgcacttctgtgagagaccttgggcaaggatcagggcaaggaatgggacagcattta
aatgcaggtttctatcataagaagagtcaaattaagcacaagaaaggtgtcacagaagag
ggtgtatctgagaaagtaaaatgtttaagtgacctgacaatgcaagacaataatacagct
tgttatggcgagacaccactctcaagcgcacgtcaatccactcgattgcagcaaggttca
ccctggacaattgaatttctgaacaaaatgagggaaaagagtcggtcacgtcagcagttt
ctcccacgtgacctatcagccccttggtatggataccccggcaaatcatcagaagtcaca
aatagaaagagtccatctactattgaattttacaagtatcaaggaaacagttgccaagag
gcagggaccgggagaaagaggcctaagaaatgcatccagctaccagcatccactactgag
aaggcttcagatcgtcttattccaacgtggacacccgatgataagagggcaaaacgggtg
ctatcatttgcaacaaatggaaatggagggcaaactaacctgatatggagtgataagaac
tctcatacattgggtagacgatattaa
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integrated database retrieval system
