Nicotiana tomentosiformis: 104088299
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Entry
104088299 CDS
T05025
Name
(RefSeq) protein STABILIZED1
KO
K12855
pre-mRNA-processing factor 6
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104088299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nto03041
]
104088299
Spliceosome [BR:
nto03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104088299
Complex C
U5 SnRNP specific factors
104088299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
HAT_PRP39_N
TPR_19
Suf
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_16
HAT_Syf1_CNRKL1_C
TPR_17
TPR_8
TPR_CcmH_CycH
TPR_2
TPR_6
ubiquitin
TPR_1
ARM_TT21_C
PMC2NT
Motif
Other DBs
NCBI-GeneID:
104088299
NCBI-ProteinID:
XP_009591253
LinkDB
All DBs
Position
7:24156595..24160115
Genome browser
AA seq
1024 aa
AA seq
DB search
MVFINLPDNKTLFLDINPCITSLQTLTLKINENFHIPTTQQRLFLSCRRLLNTDVRLSDL
GIFPNSTLTLHVPLLGGMQAPGAPKARLDFLNTRPPPNYVAGLGRGATGFTTRSDIGPAR
AAPDLPDRSAAAVGGAAPAAGGVGRGRGKGGAGEEDEEDDNEEKGYDENQKFDEFEGNDV
GLFASAEYDEDDKEADAIWEAIDQRMDSRRKDRREARLKEEIEKYRASNPKITEQFADLK
RKLYTLSSDEWDSIPEIGDYSLRNKKKRFESFVPVPDTLLEKARQEKEHVSALDPRSRIV
GGMDTPSAQTPVADLTAVGEGRGTVLSVRLDRILDSVTGQTVVDPKGYLTDLKSMKITSD
AEISDIKKARLLLKSVTQTNPKHPPGWIAAARLEEVAGKMQVARQLIMKGCEECPKNEDV
WLEACRLASPLEAKAVIAQGVKANPNSVKLWMQASKLEEDTANKSRVLRKGLEHIPDSVR
LWKAVVELANEEDARLLLQRAVECCPLHVELWLALAKLETYESAKKVLNKAREKLPKEPA
IWITAARLEEANGNTASVGKIIERAIRALQREGLEIDREAWMKEAEGCERAGSLGTCQAI
INNTVGIGVEEEDRKRTWVADAEECKKRGSIETAKYIYAHALTVFRTKKSIWLKAAQLEK
SHGTRESLDALLRKAVTYIPKAEVLWLMGAKEKWLAGDVPAARAILEEAFAAIPDSEEIW
LAAFKLEFENRETERARKLLAKARERGGLERVWMKSAIVERELGNVDEERRLLDDALRRF
PSFFKLWLMLGQLEERLGNSDKAKDAYESGIKNCPNCIPLWLSLASLDEKMNGLSKARAV
LTMARKKNPQNSELWLAAVRAEARHAYKREADVLMAKALQECPNSGILWAASIEMAPRPQ
RKTKSSDALKKCDHDPHVIVAVAKLFWQERKVDKARNWFNRAVTLAPDIGDFWALYLKFE
QQHGTEEQRNDVLKRCIAAEPKHGEKWQATAKAVENSHEPTESILKKVVATLKKEENLAE
NNHN
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggtttttatcaatcttcccgataacaaaaccctattcctagacattaatccttgtata
acttctctacaaaccctaaccctaaaaatcaatgaaaatttccacatcccaaccacccaa
cagcgtctttttctttcctgccggcggttactgaacaccgacgtacggttatccgatcta
ggaattttccctaattcgactctaaccctacacgttcctctcctcggaggtatgcaagca
cccggggcaccaaaagcccgactcgatttcctaaacacaaggccgcctccgaattatgtt
gctggattgggccgtggtgccacgggtttcaccacccgttctgatattgggcctgcccgt
gctgctcctgacctccctgatcgttcagctgctgctgttggtggcgctgcaccggcagct
ggcggcgttggccgcggccgcggcaagggtggtgccggagaggaagatgaggaggatgat
aatgaggaaaaaggttacgatgagaaccagaaattcgacgaatttgaaggtaatgatgta
gggctatttgcttctgctgagtatgatgaagatgataaagaagctgatgctatttgggaa
gctattgatcagagaatggattcgaggaggaaagatagaagagaagccaggttaaaggaa
gagattgaaaagtatcgagcgtctaacccgaagattactgaacaatttgctgatttgaag
aggaaactgtatacattgtcgagtgatgagtgggatagtatacctgaaatcggggattac
tcgttacgaaacaagaaaaagaggtttgagagttttgtgcctgttcctgatacacttttg
gagaaggctaggcaggagaaagagcatgtaagtgcattggatccgaggagcaggatagtt
ggtggcatggatacgccttccgctcagacgcccgttgctgatttgactgccgtgggtgaa
gggagaggaaccgtgttatcggtgaggttggataggattttggactcggttactgggcaa
acggttgtggatcctaagggatacttgactgatttgaagagcatgaagattactagcgat
gctgagatttcggatataaagaaggctaggttgttgcttaagtcagttactcagacaaat
ccgaagcatcctcctggttggatagcagctgctagactggaggaggttgcgggaaagatg
caggtagcgaggcagttgataatgaaaggttgtgaagagtgtcctaagaatgaggatgtt
tggttggaggcgtgtcgtttggcgagccctcttgaggccaaggcagtgattgctcaaggt
gttaaagcaaatcctaattcagtgaaattgtggatgcaggcctcgaagttggaggaagat
acagcgaataagagccgtgtgttgaggaaaggtctagagcatatccccgattcggtgagg
ttgtggaaagctgttgtggagttggctaatgaggaagatgctagacttttgcttcagagg
gcggtggaatgctgtccattgcatgtggaactgtggcttgctcttgctaagttggaaact
tatgaaagcgcaaagaaggtacttaacaaggctagagaaaagcttcctaaggagcctgcc
atctggatcactgcagctaggctggaagaagccaatgggaatactgcttctgttgggaaa
attattgaaagggcaatcagggctttgcagagagaaggtttggagattgacagggaggct
tggatgaaggaggccgaaggatgtgaaagagccggttctcttgggacttgccaggctata
ataaataacactgttgggattggtgtcgaggaagaagataggaagaggacctgggttgct
gatgctgaggagtgcaagaaaaggggttccatcgaaacggcaaaatacatttatgcacat
gctcttactgtatttagaactaagaaaagcatctggcttaaagcagcacagctcgagaaa
agccatggcacaagggaatcacttgatgcattgcttcgaaaagcagttacttacattcca
aaggctgaggttctatggttgatgggtgcgaaggagaagtggcttgctggtgatgttcct
gcagctcgagcaattctggaggaagcatttgctgcaattcctgattctgaggagatatgg
cttgctgctttcaagctcgagtttgagaaccgtgagacagagagggcgaggaagcttctt
gctaaggcacgtgaaaggggaggcttggaacgggtctggatgaagtcagccattgtggag
agagagctcgggaatgtggacgaggagaggagattgctggatgacgcattgaggcgcttc
ccctcattttttaaactttggttgatgttgggacagttggaagagagacttggtaattct
gacaaggcaaaggatgcctatgagtctggcattaagaattgtcccaattgtatacccctt
tggctgtcccttgcgtctctagatgagaagatgaatggtctgagcaaagctcgagcagtt
ctgaccatggccaggaagaagaatcctcagaactctgagctatggcttgcagctgtgcga
gctgaagctaggcatgcatacaaaagggaagctgatgtgctgatggctaaagcattgcag
gagtgccccaacagcggcattctatgggctgcgtcaattgagatggcgcctcggcctcaa
agaaaaactaagagctctgatgctctaaagaaatgtgatcatgatccgcatgttattgtt
gctgtggctaagctgttttggcaggagaggaaagtagacaaagcaagaaattggttcaac
agggcagtgacccttgcaccagatattggtgatttctgggcattgtacttgaaattcgaa
cagcagcatggaacagaggagcagaggaatgatgtattgaaaaggtgcattgctgcagag
ccgaagcatggggaaaaatggcaagctacagccaaggccgtagagaactctcatgaacca
acagaaagcatattgaagaaggtggtagccacattaaagaaggaggagaatttggctgaa
aataaccacaactaa
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