Nicotiana tomentosiformis: 104088633
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Entry
104088633 CDS
T05025
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104088633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nto03036
]
104088633
Chromosome and associated proteins [BR:
nto03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
104088633
SWR1 complex
104088633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
HDA2-3
Myb_DNA-bind_6
Myb_DNA-binding
Cas3-like_C
Motif
Other DBs
NCBI-GeneID:
104088633
NCBI-ProteinID:
XP_070052860
LinkDB
All DBs
Position
3:18899597..18939127
Genome browser
AA seq
2137 aa
AA seq
DB search
MASKGYKSKPDHEIRVRRPKGLEAPKEPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
KKVAIRASKGMLDQATRGEKRVKEEEQRLRKVALNISKDIKKFWLKIEKLVLYKHQLELD
EKKKKALDKQLEFLLGQTERYSTMLAENLVSSPTTSKRINSLSAPEALRTQCKEGSEGDV
KNRVGENLQSHSTGSDIDDDFDVQSEDEMEDDEHTIEEDEAVITKEEREEELAALQNEMD
LPLEELLKHYAVGEASRDCSPEKSGTDITVSSGEDSDKCRDDDIAIETNGGCLPAISGRR
SVESNGVLSVPNNQYPDLGQNKLKNPPKKYQELDKVNLLGVFNEEQDDDDYVLAVGEDKE
YNMDDETTMSEEEELAKAEPNDSADEIALLQKESELPLDELLARYKEDYDTDENVGDDSE
SYASASTAQNESELSQVNDGPSDVLPTTVTETEEREVESMDKTGEERQSEDFSGSPAKNE
SEPNQVNDGPSDLLPTTVTETEEREVGSMAKTGEERKSEDFSESPAKNESEPSQVNDGPS
DVLPTTVTEIEEKEVGSMDKTGEERQSDDIIADAAAAARSAQPTGNTFSTTKVRTKFPFL
LKFPLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIV
VPTSVMLNWETEFLRWCPAFKILTYFGSAKERKIKRQGWLKPNSFHMCITTYRLVIQDSK
VFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLM
PHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPSKH
EHVIYCKLSRRQRNLYEDFIASSETQATLASTNFFGMISVIMQLRKVCNHPDLFEGRPIV
SSFDMSGIDMHLSSSICSMLSHGVFSTVNLGALGLLFTHLDFSMTSWESHDVQSIATPSS
LIEGRVSQIYGEETSLVLRRNKKFHGTNIFEEIQKALAEERLREAKERAASIAWWNSIKC
KRKPVYSTSLREIVTVKHPVHGIYCQKSNPLSYLYSSRLAELILSPVERFQKMVDQVETF
MFAIPAARSPAPACWCSKPGTSVFFSPTFKERSSKVLSPLLTPFRPAIVRRQVYFPDRRL
IQFDCGKLQELAGLLRRLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTLPEQ
RQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQ
TREVHIYRLISESTIEENILKKANQKRALDDLVIQGGSYNTEFFKKLDPMELFSGHRALS
LKNIEGEKNSNDTEVQLSNADVEAALQNVEDEADYMALKKVEQEEAVDNQEFTEEAIGRL
EDDELGNDDEMKADEPADHEVPVTTSSKELVVMSNASNLLKEQAITFAGKDDDIDMLADV
KQMAAAAAAAGQAILSFESQLRPIDRYAVRFLELWDPIIDKTAIESQGHFEETEWELDRI
EKLKEDMEAEIDDDEEPLVYERWDADFATEVYRQQVEALAQHQLMEELEAEAKEKELAEY
ENLMGHATASVPKSKSKKKAKKTKFKSLKKGGLASEPQALKDGSSIELMTIDDDVLSSDP
VTTPDSAQERKRKLATGDEDVKSAKKSKKLKRSSEVSSLVMHSSYHGKHSSYHGKRPVES
KELKRYDGGTVDVELRPISRSRMGGKISISSMPVKRVLTIKSEKPIRKGKLWYKDYFPSA
DSWLPQEDAVLCASVHEYGPHWSLVSDILYGMTAGGVYRGRYRHPVLCCERYRELIQRYV
LSATDIVNDRSNNAGSIKGLLKVTEENVRLVLDIASEVPDHEPLVQKHFFALLSSVWKMS
CRKSQTNAFSSSQNGFYHSGSLFTPTLNLVSTKGPLEKRFSNISICAKLVAAALSDQQSA
QSDERVSICDQREEASFPAEQLDVTLEFGTEKDDKTIPLPSPVTVKIRGPESPLPPRMMI
AEHHHFKSSLNVAENRFWAASSTEGCLDWASLAFPVGDAKSQTPLKSQFLGKHKLSDSVK
VSKSKSRKIPMESSDVGQTKDLVILPMPSASNDSCARADVGLSFLTERGHDFEDRTLFDL
NSEFNLGSEDVFQHEYVPDFISGLDDWSVFPEFTDIG
NT seq
6414 nt
NT seq
+upstream
nt +downstream
nt
atggcttctaaagggtataagtctaagccggaccatgaaatacgtgttcgacgtccaaag
ggtcttgaagcacctaaagaacctcgacgacctaaaacacactgggatcatgttctggaa
gagatggtctggttgtcaaaggactttgaatcagagagaaagtggaagttggctcaggca
aagaaggttgctatacgagctagcaagggaatgcttgatcaggcgacacggggagaaaag
cgagttaaggaagaagagcaacgtttgcgaaaagttgcactcaatatctcaaaggacatc
aaaaagttctggttaaaaatagagaagctggttctttacaagcatcaattggagctggat
gagaagaagaagaaagcacttgacaagcagctagagttccttcttggacaaacagaaagg
tactcaacaatgcttgcagagaaccttgtaagttcaccaactaccagcaaacgaatcaat
tctttgtctgcaccagaagccttgagaactcaatgtaaagaagggagtgaaggggatgta
aagaatcgtgttggagaaaatcttcaatctcattcgactggtagtgatattgatgacgat
tttgatgtgcagtctgaagacgaaatggaagatgacgagcataccattgaagaagatgag
gctgttataactaaagaagaaagggaagaagagttagctgctttacaaaatgaaatggat
ctacctcttgaggagcttcttaagcattatgcagttggggaagctagcagagattgtagc
ccagagaagagtggtacagatattacagtcagttctggcgaggacagtgataaatgtaga
gatgatgatattgctattgaaaccaacgggggctgcttgcctgcaatttctggtcgtcgt
tctgttgaaagtaatggcgtcttatcagtaccaaataaccagtatcctgacctagggcaa
aacaagctaaaaaatcctccgaagaagtatcaagagttagataaagttaatttgttaggt
gtctttaatgaagaacaggatgatgatgattatgtccttgctgttggtgaagataaagaa
tataatatggatgatgaaacaactatgtcagaggaggaagaattggcaaaggcagagcca
aatgattctgcagatgagattgcactgttgcagaaggagagcgaacttcctttagatgag
ctccttgctaggtataaagaggattatgatactgatgaaaatgtgggggacgattctgaa
tcatatgcgtctgcttcaacagcacaaaatgaatctgaactgagtcaagtaaatgatgga
ccgagcgatgtactgcccactacagtcactgagacagaagaaagggaagttgaaagcatg
gataaaacaggggaagaaaggcagagtgaggatttttcgggatcgccagcaaaaaatgaa
tctgaacccaatcaagtaaatgatggaccgagcgatttactgcccactacagtcactgag
acagaagaaagggaagttggaagcatggctaaaacaggggaagaaaggaagagtgaggat
ttttcagaatcgccagcaaaaaatgaatctgaacccagtcaagtaaatgatggaccaagc
gatgtactgcccactacagtcactgagatagaagaaaaggaagttggaagcatggataaa
acaggggaagaaaggcagagtgatgatataattgctgatgcagcagctgctgccagatca
gcacaaccaacgggtaacaccttctcaacaaccaaagtgcggactaagtttcccttcctt
ctaaaatttccccttcgtgagtatcaacatattggtttggactggcttgtaaccatgtat
gagaagaaacttaatgggatcctagcagatgaaatgggtttggggaagactatcatgaca
attgctcttcttgctcacctagcatgtgaaaaaggaatatggggcccccatcttattgtt
gtcccaactagtgtcatgctaaactgggagactgagtttcttagatggtgtcctgctttc
aaaattttgacatattttggcagtgcaaaagagcgaaagattaaaaggcaaggttggttg
aagccaaactcgtttcatatgtgtatcacaacttacagacttgttatacaggactccaaa
gttttcaagcgtaagaagtggaagtacttgattttagatgaagctcatctaataaagaat
tggaaatcgcaaagatggcaaacgcttctcaattttaactcaaaacggcgtattcttttg
actggtacaccattgcagaatgatctcatggagctgtggtctctaatgcatttcttgatg
ccacatatttttcaatctcatcaggaattcaaagattggttctgtaatcctatatctgga
atggttgagggacaagaaaaggttaataaggaagttgttgatcgcttgcataatgtcctt
cgtccctttattctccgccggttgaagagggatgtggagaagcagcttccttcaaaacat
gagcacgtcatttattgtaagctatcaaggaggcagcgtaacttgtatgaagattttatt
gccagttcggagacacaagctactcttgctagtacaaatttttttggcatgataagtgtt
ataatgcaacttcgcaaagtgtgcaatcaccctgatttatttgaagggcgtccaatagtg
agctcctttgatatgagtggtattgatatgcacttgagctcttccatttgctcgatgctg
tcgcatggtgtcttttcaactgtcaaccttggggctttggggttgttgtttacacatctt
gatttttcaatgacctcttgggagagtcatgatgttcaatccattgcgaccccttcaagc
ttgattgagggtcgtgtgtctcaaatttatggtgaagaaacttcactagtacttagacgg
aataagaagtttcatgggacaaacatatttgaagagatccaaaaggcacttgctgaggag
aggctaagagaagcaaaggagagagcggcatctattgcatggtggaattccatcaagtgt
aagcggaaacctgtatattcaacaagtcttcgggagattgtcactgtgaaacatcctgtt
cacggtatttactgtcagaaaagtaatcccttgtcatacctgtactcctctaggcttgca
gaattgatactgtcgccagttgagagattccaaaaaatggttgatcaggttgaaactttc
atgtttgcaatccctgctgcacgttccccagcacctgcttgctggtgcagtaaaccaggt
acttccgtatttttcagtccaacctttaaggagagatcttctaaggttctctctccgctt
ctcactccttttcgcccagccattgttagaaggcaagtctactttccagataggcggctc
atacaatttgactgtggaaagctgcaggagcttgcaggtttgttgagacgactaaaatca
gaaggtcaccgtgcactaattttcacccaaatgacaaagatgcttgatgttttagaagct
ttcattaatttgtatggttacacttacatgcgtctggatggttctactctgcccgaacag
agacaaactttgatgcaacggttcaacacaaatccaaagattttcctttttattttatca
acccgtagtggtggagttggcatcaacttggtgggggcagacacagtcatcttttatgat
agcgactggaatccagctatggatcaacaagctcaagatcgctgtcatagaataggccag
actcgtgaagtacatatttatcgattgataagtgagagcaccattgaagagaatattttg
aaaaaagcaaaccagaagcgagctctggatgatttggttatacagggtggaagttacaac
actgaattcttcaagaaactggatccaatggaattgttctcgggccacagagcactttcc
ttaaagaacattgaaggagagaagaatagcaatgatactgaggttcagctctctaatgct
gatgtggaggctgctctgcaaaatgtagaagatgaagcggattacatggctctgaagaaa
gttgaacaggaagaggcagtagacaatcaggagttcactgaagaagcaattggtaggttg
gaagatgatgaacttggtaatgatgatgagatgaaggctgatgagcctgctgatcatgaa
gtcccggttacaacatcaagcaaagaacttgtggttatgtcaaatgctagtaatttatta
aaagaacaagcaattacttttgctggtaaagacgatgacattgacatgttggccgatgtc
aaacagatggcagcagctgctgctgctgcaggacaagctatcttgtcttttgagagtcag
ttacgtccaattgatcggtatgctgtacgttttctggagttatgggaccctatcatagac
aagacagctattgagtcacaaggtcattttgaagaaactgaatgggaattggatagaatt
gagaaattgaaggaagatatggaagcagagattgatgatgatgaagaacctttagtttac
gaaagatgggatgctgattttgcaactgaggtatacagacagcaggttgaggctttggct
caacatcagttgatggaggaactggaagctgaagctaaagagaaggagcttgcagaatat
gagaacttgatggggcatgctacagcttctgttccaaaatccaagtcaaagaagaaggca
aagaaaacaaagttcaaatctttgaagaaaggaggtctagcttctgaacctcaagcttta
aaggacgggtcttcaatagagttgatgaccatagatgatgatgttctatctagtgatcca
gttacaacgcctgattctgctcaagagagaaagcgtaaactagcaacgggtgatgaggat
gtgaaaagcgcgaagaagtctaaaaaattgaagaggtcctctgaggtatcttctctggta
atgcattcatcttatcatggcaagcattcatcttatcatggcaagcggccggttgaatct
aaagaattgaagcggtatgatggtggcaccgtggatgtcgaactcagaccaataagcaga
agcaggatgggagggaaaatctcaatcagttcaatgcctgtaaagcgagttcttactatt
aaatcagaaaagccgattaggaaaggtaaactatggtataaagattattttccatccgct
gattcatggttgccacaagaggatgctgtactttgtgcttctgttcatgagtatggtcct
cactggagcttggtgagtgatatcttgtatggaatgactgctggcggagtttatagagga
agatatcgtcaccctgttctttgttgtgaaaggtacagggaacttatacagagatatgtg
ttatctgcgacagacattgtaaacgatagatccaacaatgctggctctataaaaggtctt
ctcaaagtgactgaggaaaatgtccgactggtgttagatattgcatcagaggttccagat
catgagccccttgttcaaaagcatttctttgcccttctttcctctgtgtggaaaatgtca
tgccggaaaagccagacaaatgcgttctcatcttcccagaatggcttctatcattctgga
agtttgtttacaccaactttgaaccttgtttctacgaagggaccactggaaaagagattt
tctaatataagtatatgtgccaagttagtagcagctgctctctctgaccagcagagtgca
caaagtgatgagagagtctccatttgtgaccagagagaagaagcttcttttcctgctgag
cagttggatgttacactggaatttgggacagagaaagatgataagacaattcccttgcca
tcgcctgtaactgttaaaatacgtggtcctgaatccccattgcctccaagaatgatgata
gctgagcatcatcatttcaagtcttccctgaatgtggctgaaaaccggttctgggctgca
tcaagtactgaaggttgtttggattgggcttctcttgcttttcctgttggggatgccaag
tcacaaactccattgaaatcacaatttttggggaagcacaagctctctgattctgtgaaa
gtttccaaatcaaagtccagaaagattccaatggaatctagtgatgttggtcagaccaag
gatctagttatcctgccaatgccatctgcatctaatgattcctgtgcaagagctgatgtg
ggattatcgttcctcacagaacgtggacatgattttgaagacaggaccttgtttgaccta
aattcagaatttaacttggggagcgaggatgtattccaacatgaatatgttcctgacttc
atatcgggacttgacgattggtcagtgtttccagaattcacggatatcgggtag
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integrated database retrieval system
