Nicotiana tomentosiformis: 104088962
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Entry
104088962 CDS
T05025
Name
(RefSeq) putative tRNA pseudouridine synthase isoform X2
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
nto
Nicotiana tomentosiformis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nto03016
]
104088962
Enzymes [BR:
nto01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
104088962
Transfer RNA biogenesis [BR:
nto03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
104088962
Prokaryotic type
104088962
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
104088962
NCBI-ProteinID:
XP_009592048
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All DBs
Position
5:complement(134389989..134406416)
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AA seq
521 aa
AA seq
DB search
MTALSLRLPLIPLTNLRFSSYTRKPLTILCSFSTSPSVIPSEPCTTTAEDLSPPPPARSN
KWEPFIKKKVVMRVGYVGSDYRGLQMQRDEHELSTIEGELEKAIFKAGGIRDSNFGNLYK
IGWARSSRTDKGVHSLSTMISLKMEIPEDAWQDDPNGISLANCVNSYLPENIRVFSILPS
KKRFDARRECNARKYSYLLPAEIIGIKNGSTSSEIDYHLSNFNDILNSFEGEHPFHNYTI
RSKYRKHSPARKLLQYDCLLKKGRPSTEEEISGCEESDGEENCKENGVVTTVEDENQNPV
CNLSTGNQAGNYNGKLSHSKELYPVLPILARWLHETDARDKLSSAHFRRIFHCHCGKLEK
LFSMNYVEVSICGESFMLHQIRKMVGTAVAIKRNLLPPDVLRMSLCKFSRIVLPLAPSEV
LVLKGNNFALRNQPGNITRPEMLTLLESEDIIKAVDEFYYSTVLTQLSKFLDPSKYPWSD
WVEILDANTSIPESQLEEVRISWKLWKEQYESRTKAPSVLT
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgacagccctttctcttcgtcttcctttgattcctctaactaacctcagattctcttca
tacaccagaaagcccctaaccattctgtgttcattttccacttcaccatctgtaatacct
tccgagccttgcaccaccaccgctgaagacttatctccgccgccgccggcgaggagcaac
aaatgggagcctttcattaaaaagaaagtggtgatgcgcgtgggatacgtgggttctgat
tatcgaggtttgcaaatgcaaagagatgaacatgaactatccaccattgaaggtgaactg
gaaaaagctatcttcaaagctggaggtattcgagacagtaattttggaaacttatataaa
attggttgggcgagaagtagtcgaacagataaaggagttcattcattgtcgaccatgata
tctcttaaaatggagatcccggaagatgcatggcaggatgacccaaatgggatttctctt
gctaattgtgtgaactcatacctcccagagaacatcagagttttcagtatcctaccctca
aaaaagaggtttgatgccagaagggagtgtaatgcacgcaagtattcttatctacttcct
gctgaaatcatcgggataaagaatggctcaacttcttctgaaattgattaccatttatcc
aattttaatgacatattgaactctttcgagggagagcatcctttccacaactacacaata
cgatccaagtataggaaacattctcctgccagaaaattgttacaatatgattgtctctta
aaaaaagggagaccctcgactgaggaagaaatatctgggtgtgaggaaagtgatggagaa
gaaaactgtaaagagaatggggttgtgacaactgttgaggatgaaaatcaaaatccagta
tgcaacttgtctactggaaatcaggcaggcaactataatgggaaactcagtcattcaaag
gaactatatcctgtgttaccaatcctagcgagatggctccatgaaactgatgcaagagat
aagcttagctctgcccatttccgaagaatttttcactgtcattgtggaaagttggagaag
ttgttcagcatgaattatgttgaagtttctatctgtggagaatcattcatgttacatcaa
atacgcaaaatggtggggactgcggttgcaataaaacgcaatcttctaccacctgatgtt
ttgagaatgtcattatgcaaattttcaaggattgtcttacccctagccccatcggaagtt
ttggttttgaaggggaacaattttgctttgagaaaccaacctggcaacataacaagacct
gaaatgctgacattactggaatctgaagatattatcaaggcagtagatgagttctattac
tccacagtgttaactcaactgtctaaatttttggacccctcaaaatatccttggagtgac
tgggtagagatactggatgcaaacacaagcattccagaatcccaattggaagaagtaagg
atttcttggaaattatggaaggaacagtatgaaagcagaactaaggctccatcagtattg
acttaa
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