Nicotiana tomentosiformis: 104089413
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Entry
104089413 CDS
T05025
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03030
DNA replication
nto03410
Base excision repair
nto03420
Nucleotide excision repair
nto03430
Mismatch repair
nto03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104089413
03410 Base excision repair
104089413
03420 Nucleotide excision repair
104089413
03430 Mismatch repair
104089413
03440 Homologous recombination
104089413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nto03032
]
104089413
03400 DNA repair and recombination proteins [BR:
nto03400
]
104089413
Enzymes [BR:
nto01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
104089413
DNA replication proteins [BR:
nto03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
104089413
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
104089413
MMR (mismatch excision repair)
DNA polymerase delta complex
104089413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
REV3_N
DNA_pol_B_2
divDNApol
RNase_H_2
Motif
Other DBs
NCBI-GeneID:
104089413
NCBI-ProteinID:
XP_009592595
LinkDB
All DBs
Position
2:11428681..11472153
Genome browser
AA seq
1089 aa
AA seq
DB search
MNSGNSRKRSAAQAVATPSPQQQQKHHAAMEEEDLDEDVFLEETLLQYEEDSQILRELEE
RHALNERLQKWKRPPLSQACLSQSQSISFQQLEIDYIIGESHKELLPNSSGPAAILRIFG
VTKEGNSVCCHVHGFEPYFYISCPPGMGPDDISRFHQILEGRMREVNRNSNVPKFVRRIE
VVQRRSIMHYQKQASQPFLKIVVALPTMVTSCRGILDRGIQIDGLGMKSFMTYESNVLFA
LRFMIDCNIVGGNWIEVPVGKYKKAARNLSYSQLEFDCLYSDLISHPPEGKFSKMAPFRI
LSFDIECAGRKGHFPEPTQDPVIQVANLVTLQGQDQPLIRNVMTLKSCSPIVGVDVMSFD
TEKEVLLAWRDFIREVDPDIIIGYNICNFDLPYLIRRAEVLGMAEFPLLGRIRNSRVRVK
DSTFSSRQHGTRESKEITIEGRVQFDLFQAVQRDHKLSSYSLNSVSAHFLNEQKEDVHHS
IISDLQNGNSETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLARGQS
IKVLSQLLRKARQRNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSI
MMAYNLCYCTLVTPEEFHKLNLCEVDVNKTPSGEMFVKSDLQKGILPEILEELLAARKRA
KADLKEAKDPLVKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEK
TKKLVEDKFTVLKGYEHNAEVIYGDTDSVMVQFGVPTVEEAMKLGREAADHISETFIKPL
RLEFEKIYYPYLLISKKRYAGLLWTNPDKHDKMDAKGIETVRRDNCLLVKNLVTECLHKI
LMDRDVPGAVQYVKNTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRD
AATAPNIGDRVPYVIIKAAKGSKAYEKSEDPIYVLENNIPIDPHYYLENQISKPLLRIFE
PILKNASKELLQGSHTRSISISTPSNSGIMKFAKKQLTCIGCKALISGSDRTLCNHCKGR
EAELYCRSVANVAELEKLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEA
KLQLDRWNF
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcggcaactcaaggaagcgatcggcggcacaagcggttgcaacgccgtcgcct
cagcagcagcagaaacaccacgccgccatggaagaagaagacctagacgaggacgttttc
ctcgaagaaacattgcttcagtacgaagaagattcccaaatcctccgtgaactcgaagag
cgccacgccctaaatgagcggcttcagaaatggaaacgccctcctctttctcaagcttgc
ctctctcagtcccaaagcatatcgtttcagcagctggagattgactacattattggagag
agccataaagaattgctgcctaattcttctggtccagctgccattttaagaatctttggg
gtcaccaaggaaggaaatagtgtttgttgtcatgtacatggatttgaaccatacttctac
atcagctgccctcctggaatgggccctgacgatatctcccgttttcaccaaattctcgag
ggtagaatgagagaggtgaataggaacagcaatgtccctaaatttgtccgtcgcatcgaa
gtagttcagagaagaagcatcatgcattaccaaaagcaggcttctcagccttttctcaag
attgtagtggcattgccaacgatggttaccagttgccgtggtatccttgatagaggtatt
caaattgatgggcttggtatgaagagctttatgacctatgaaagtaatgttctttttgct
cttcgcttcatgattgactgcaacattgtcggtggcaactggattgaagttccagttgga
aaatataagaaagctgcaaggaatctctcctatagtcaattagagtttgattgtctctat
tctgacttgattagccatcctccagaaggaaaattttcaaagatggctccgtttcgcata
ttgagtttcgatattgaatgtgctggtcgtaagggccactttcctgagcctactcaagat
cctgttattcaggtggccaatctagttaccttgcagggacaggatcagccattaattcgt
aacgtgatgacccttaagtcatgctcacctatagttggggttgatgttatgtcgtttgac
acagaaaaagaagtattgctggcatggagggactttatacgggaagttgacccggacatc
ataattggatataacatctgcaactttgatttgccatatctcatccggagagctgaagtc
ttagggatggcagaatttcctctgcttggacgcatcagaaacagcagggttcgtgtaaaa
gattcaaccttttcttcaagacagcacgggacaagggaaagtaaagaaataacaatagaa
gggagagttcaatttgatttatttcaggctgtgcaaagggatcataaactaagttcttac
tcactaaattctgtctcagcgcattttcttaatgagcagaaggaggatgtccatcattca
attatatcagatcttcaaaatgggaactcagaaactaggaggcggcttgctgtatattgt
ctaaaggatgcttatctcccgcaacggcttttggataaattaatgttcatttataactat
gtggagatggctcgagttactggtgtacctatatcttttcttctcgcaagagggcaaagc
attaaggtactctctcaacttttaaggaaggcgaggcaaaggaatcttgttataccaaat
gtaaaacaggctggatctgagcaaggaacatatgagggtgcgacggttttggaggctcga
gctggtttttatgagaagccaattgcaactttggattttgcatctctatatccgtcgatc
atgatggcatataatttatgttactgcacgctagtaactcctgaagagttccacaaacta
aacctctgtgaagtggatgtcaacaagaccccttctggtgaaatgtttgtcaagtcagat
ttacagaaggggatacttccagaaattcttgaagaactattggccgctcgcaaaagagca
aaagcagatttaaaggaagcaaaagatcctttagtcaaagctgtcttagatggacgtcag
ctagctttgaagattagtgcaaattcagtatatgggtttactggagctactgttggtcaa
ttaccatgtttagaaatatcttcaagtgttactagctatggtcgacagatgattgagaag
acaaaaaagcttgtggaggacaagttcacagtacttaaggggtatgaacacaatgctgag
gttatatatggagatacagattcggtgatggtgcagtttggtgtgcctacagtggaagag
gctatgaaattgggtagagaagctgctgaccacattagtgagacatttatcaaaccatta
agactagaatttgagaagatatattatccatatctgctgattagcaagaagagatatgcc
ggccttctatggacaaatccagacaaacatgacaaaatggacgctaaagggattgaaact
gttcggagggataattgtctcttggtcaagaaccttgtaaccgagtgccttcataaaata
ctaatggacagagatgttcctggtgctgttcaatatgtcaagaatactatctcagatctt
ctcatgaaccgcatggatttgtctcttttggttattactaagggtctgacgaaaactgga
gatgattatgaagtaaaggcagcacatgttgaacttgcagagcgaatgcgcaagcgagat
gctgctactgcacctaatattggtgatagagtaccttacgtcatcattaaagctgcaaaa
ggttccaaggcatatgaaaagtcagaggaccctatttacgtattagagaacaacatacct
atagatcctcattactatcttgaaaatcaaattagtaagccacttctgaggatttttgag
ccaatactgaagaatgcaagtaaagagcttcttcaaggaagtcatacaagatcgatctca
atatcgaccccttcaaacagtggtattatgaaatttgctaagaagcaactcacttgcatt
ggatgcaaagcactaatcagtggttctgatcgaactctctgcaatcactgcaaaggaaga
gaagctgaactttattgcagatccgtggctaatgtggctgaactagagaagctttttggg
aggctatggacacaatgccaagaatgccaaggctctctccatcaggatgtcctatgcact
agtcgagactgcccaatattttatcggaggaagaaggcccagaaagacatggctgaagcc
aaacttcaattggatcggtggaacttttaa
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