Nicotiana tomentosiformis: 104089630
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Entry
104089630 CDS
T05025
Name
(RefSeq) protein CHROMATIN REMODELING 25
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104089630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nto03400
]
104089630
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
104089630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
SLFN-g3_helicase
AAA_22
SWI2_SNF2
DUF7231
Motif
Other DBs
NCBI-GeneID:
104089630
NCBI-ProteinID:
XP_070052943
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All DBs
Position
3:33608826..33622769
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AA seq
958 aa
AA seq
DB search
MEAEEEEVLSSSERDDSSDEFLCEPDDDIDFESNSGDDDQNVESHAGTSSPDEDRKSQNV
DALVRGNLIVKRQSLLPRVYSVTDAAANLRKPFKPPSSNGYSSTNEHLARRLCARKRFVP
WGSTRPVLLAITNRLHAPEAAEIDAVEENVELPPGVEALVLWQPEEIVEEGCNLVPIIVD
PLLVKFLRPHQREGVQFMFDCVSGALSTFNINGCILADDMGLGKTLQSITLLYTLLRQGF
DGKPMVRKAIVVTPTSLVSNWEAEINKWVGERVKLVALCESTRDDVVSGIESFINSLSNL
QVLIVSYETFRMHSSKFSNSGSCDLLICDEAHRLKNDQTLTNRALAALACKRRVLLSGTP
MQNDLEEFYAMVNFTNPGILGDAAHFRRYYEAPIICGREPTAVEEEKKLGSDRSAELSSK
VNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSDLYNHFIHSKNVKRAITEEAKQSKIL
AYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPEMFSGRCGSWTGGSGLWVELS
GKMHVVARLLAQLRQKTDDRIVLVSNYTQTLDLFSQLCRERRYPFLRLDGTTSISKRQKL
VNRFNDPTKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARIWRDGQKKR
VYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQIDSDIQGNFLSAEDLRDLFTFHDSVR
SEIHEKMSCNRCQPDAVMPDDNPIADFNTQGLQPDQEDIGGFAGVAGCLHALRSSEKQIG
APKEEDLASWGHHFSPKSVPDVIFQSAAGDEVSFVFSCQVDGKLVPVESTLKPKQEVENR
ELSHFKEKLLKKSNFSSPRRAPSLPTLSSSKQSSEKENSIQKLNLISQAQALSTSTSTPN
EISLSTLPAFFKPLQKPRSKLYRPLEDTKINLKNKLFSENHLPRKRLSPDYINDDDFA
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgaggaggaggaggttctttcgtcgtcagaacgtgatgattcgagcgacgaa
ttcctttgcgagcccgatgatgacatcgatttcgaatctaatagcggcgatgatgaccag
aatgtagaatctcacgcgggtaccagttcgcctgatgaagatcgaaaatcgcaaaatgtt
gatgctcttgtgaggggtaatcttattgtgaaaagacaatccctacttccacgagtctat
tcagtgacagatgcagcagccaatctccgaaagccattcaaacctccaagctccaatggt
tacagtagtaccaatgagcatctagcccgtcgtctttgtgctcgtaaaaggtttgtgcca
tgggggtcaacaaggccagtgttgcttgcaattacaaacaggctgcacgctccagaagct
gctgagatagatgcggtggaagaaaatgtagaactgccacctggtgttgaagctttggtg
ttgtggcagcctgaagaaattgtggaggaaggctgtaatttagtacctataattgtggat
ccattgcttgttaagttccttcgtcctcatcaaagggaaggggtccagttcatgtttgat
tgtgtctcgggtgcacttagtaccttcaacattaatgggtgcattttagctgatgatatg
ggtttagggaagactctgcaatcaatcactctactttacactcttcttcgccagggattt
gatggaaaaccaatggtcaggaaggcaatagttgtgacccctaccagtctcgttagtaat
tgggaggccgaaatcaataagtgggttggagaaagagttaagcttgttgctttatgtgaa
agcaccagagatgatgttgtgtctggcatagaaagttttattaattcacttagtaattta
caggtcttaattgtttcctacgagacatttcgaatgcattcttcaaaatttagtaattct
ggatcatgtgaccttctcatatgtgatgaggctcacagactgaaaaatgatcaaacgctg
actaatcgagcgttggctgctttagcttgcaagcgccgggttctgctatcagggacacca
atgcaaaatgatctagaagagttttatgctatggttaatttcaccaatcctggtatcttg
ggcgatgctgcacactttcggcgttattacgaggcaccaataatttgtggtagggaaccc
actgctgtcgaggaagagaagaaattaggatctgaccgctctgctgaactgagttccaaa
gttaatcagtttattttgaggaggacaaatgcgttattgtcaaaccacctaccaccaaag
ataatcgaagttgtttgttgcaagttgacacctctccaatcagatctatacaatcatttt
atacattcgaaaaatgtgaaacgagctatcactgaagaagcaaagcaatcaaaaatctta
gcttatataacagctctgaagaagctttgcaatcatccgaagctgatatacgacacaata
cgaagtggaagtccagggacatcaggatttgaggactgcatccgctttttccctccagaa
atgttttctggaaggtgtggctcatggactggcggatctgggttgtgggttgaactgtca
gggaaaatgcatgtcgtagcccggctactggctcaacttcgtcagaaaactgatgatagg
attgttttggtttccaactacacacagacgctggaccttttctctcaattatgccgtgaa
aggagatatcccttcttaagacttgatggaactacatcaattagtaaaagacagaagcta
gttaatcgtttcaatgatccaacaaaggatgagtttgcatttctgttgagcagcaaggct
ggaggttgtggtcttaatttgatcggtgggaaccgtctggttttgtttgatcctgattgg
aatccagccaatgacaaacaggctgctgcaagaatctggagagatggacaaaagaagagg
gtctacatctataggtttttgagtactggaactattgaagaaaaggtctaccaacgtcag
atgtcaaaggagggtcttcagaaagttattcagcaggaacaaatagattctgatatccag
ggaaactttctctcggcagaagacctgcgggacctgttcacatttcatgatagtgtgagg
tctgagattcatgaaaaaatgagctgcaaccgctgccaaccagatgcagtgatgccagat
gacaacccaatagctgatttcaacactcagggtcttcagcccgaccaagaggatattggg
ggatttgcaggtgtagctggttgtcttcatgcattacgaagctcggagaaacagattgga
gctccaaaggaagaggacttagccagttggggtcatcatttttccccaaaatccgtgcca
gatgtaattttccagtctgcagcaggagacgaggtttcttttgttttctcttgccaagtg
gatgggaagcttgtgcctgttgaatcaacactaaaaccaaaacaggaggtggaaaataga
gagttgtctcatttcaaagaaaagcttttgaaaaagtccaatttttcatctccacgacga
gcaccatcattaccaacattgtcatcaagcaagcaatccagcgagaaggaaaattcaatt
cagaaactgaatttgatatcgcaagctcaagcgctgtcaacatcaacatcaactcctaat
gaaatttctctgagtacattacctgcatttttcaaacctttgcaaaagccaagaagcaag
ctatatagacctttagaggatactaaaataaacttgaagaacaaactcttttccgagaat
catttgcccagaaagagattatctcctgattacataaatgatgatgattttgcctag
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