Nicotiana tomentosiformis: 104090765
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Entry
104090765 CDS
T05025
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104090765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104090765
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104090765
mRNA degradation factors
5'-3' decay
Decapping complex
104090765
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
104090765
NCBI-ProteinID:
XP_009594235
LinkDB
All DBs
Position
5:complement(39319458..39328622)
Genome browser
AA seq
822 aa
AA seq
DB search
MERSNSRDIKGLASSSSSSISDSALFDASQYAFFGRDISEEVELGGLEDEQENNDLAVGG
GLGDDEIHEYHLFEKDEGSVLSSLSDLDDLATTFSKLNRNVIGPRHPGVIGDRGSGSFSR
ESSSAAEWAKEADFHDWFDQHLSDTECYQESKKWSSQPHISAVHLAESKPLYRTSSYPEQ
PPQPPQLQHYSSEPILLPKSAFTSFPPPGGRSQPSPHGLSRQNMSSLSAGPQSPYSTANL
SSLSNSNMHLTGLPHGLHYGGNIPQLNPTGLSLNTRLQNQWSSHAGLIHGDHSGLLDSVL
QHQFPHQSSLLSPQFMSPQQLQQQRLHPSVQPSLAHFSALRSQLFSSFSSPSHLGKYGMA
DLRDPRSKPSHKVRQNVRFSKQSSDAASHKSESNVPQFRSKYMTGDEIESILKMQHSAAH
GNDPYVDDYYHQARLAKKAAESRSKHRFCPNKEQSSRSRNSTESQPHLHVDAHGRVSFSS
IRRPRPLLEVDPPGFVCIEGSGEQKISERPLEQEPMLAARITIEDGFYLLTEVDDIDRLL
QFSQPQDGGAQLKRKRQILLEGMAASLQLVDPLGKSGSSVGLTPKDDIVFLWLVSLPKGR
KLISRYLQLLLPGGELVRIVCMAIFRHLRFLFGGLPPDPEAAETITDLAKIVSKCVSGMD
LNSLSACLAAVVCSSEQPPLRPLGSPAGDGASIILKSVLERATHLLTDSQAANSFSMPNP
ALWQASFDAFFGLLTKYCLSKYDSIMQSILTQSQSDAEMISPEAARAVSREMPVELLRAS
LPHTDEHQRKLLLNFAQRSMPVTGFNAHGGSSGHINPESVSC
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggagagatccaatagcagagatattaagggcttggcgagctcctcctctagctccatc
tcagatagtgcgctcttcgatgcatcacagtatgcattctttgggcgagatatatcagag
gaagttgaattgggtggtttagaggatgaacaagagaacaatgatctggctgttggaggt
ggattaggtgacgacgagatacatgagtatcatttatttgagaaagacgagggatcagtc
ttgagctctttgtcagacttggatgatctagcaacaacattttcaaagttgaacagaaat
gtaattggaccaaggcatcctggtgtcattggtgaccgtggatcaggttcattttcaagg
gaaagttcctctgcagctgaatgggcgaaagaagcagactttcacgattggtttgatcag
catttatctgacactgaatgttaccaggaaagcaaaaaatggtcctcacagccacatatc
tctgcagtgcatcttgcagagtcaaaaccattgtatagaacatcctcataccctgagcaa
cccccacaacccccacaacttcagcactactctagtgaacccattttattacccaaatca
gctttcacttcttttcctcctcctggtggtagatctcaaccctcaccacacggcctttcg
cgacaaaacatgtcatctctttctgctggacctcagtctccctattcgactgctaatctg
tcttctttgtcgaactctaatatgcatttgactggcttgcctcatgggctccactatggt
ggaaacatcccgcagttgaacccaactggtctctctcttaataccaggttgcaaaaccag
tggagcagccatgcaggacttatccatggggaccattctggtctcttagatagtgtctta
cagcatcagtttcctcatcaaagcagtttattatccccccagttcatgtccccacagcag
ctgcaacagcagagactgcatccttcagttcagccgtctttagctcatttttctgcacta
agatctcaattgtttagttccttctcttcaccatctcatctaggaaagtatggaatggct
gatttgagagatccacgatctaagccatcacacaaggttagacaaaatgtgcgcttttct
aaacaaagctctgatgctgctagccacaaaagtgaaagtaatgtgccacagttccgatcc
aagtatatgactggtgatgaaatagagagcatcctgaagatgcagcattctgcagcacat
ggcaatgacccatatgtagacgattactatcaccaggcccgccttgcaaagaaagcagcc
gagtcgaggtcaaaacatcgtttttgcccaaataaggagcagtcttctcggtcacgtaat
agcacagaatcacagcctcatctccatgttgatgctcatggacgggtttcattttcttcc
atccgcaggcctcgcccacttcttgaagttgatccaccgggctttgtttgcattgaaggc
agtggtgaacagaagatatccgagagacctttggaacaggagccaatgcttgcagctaga
attactatagaagatggtttctatcttctcactgaggtagatgacattgacaggctcctt
cagtttagtcagccccaagatggcggtgctcagctcaagcggaagcggcagatcctactg
gaaggcatggcagcctcacttcaactagttgacccacttggcaaaagtggcagttctgtt
gggcttaccccaaaagatgacattgtatttctgtggttagtgtctcttcccaagggccga
aagctcatctcaaggtatcttcagcttcttctacctggtggcgagcttgttagaatagtt
tgtatggcaattttccgccatttgaggtttttgtttggcggccttccacctgatccagaa
gcagctgagaccatcactgatcttgcaaaaatagtctcaaaatgcgtcagtggcatggac
cttaattcactcagtgcttgtcttgctgctgtcgtttgttcctcagaacagccacctctt
cgccctcttggaagccctgctggagatggagcctccattattctaaaatctgttcttgaa
agggcaactcatctgttaactgattctcaggctgctaacagcttcagcatgcctaatcct
gccctttggcaggcatcttttgatgccttttttggtttgcttacaaagtattgtctgagt
aagtatgacagtatcatgcaatccatactaacacagtctcagtcagatgctgaaatgatt
agtccagaggctgcaagagccgtaagcagagaaatgcctgtggaacttttacgtgctagt
cttccacatacagatgagcaccaaaggaaactgttgttaaattttgctcagcggtccatg
cctgttaccggattcaatgctcatggtggaagcagtggacatataaatcctgaatctgta
agctgttag
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