Nicotiana tomentosiformis: 104090830
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Entry
104090830 CDS
T05025
Name
(RefSeq) uncharacterized protein isoform X2
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
nto
Nicotiana tomentosiformis
Pathway
nto04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104090830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nto04131
]
104090830
Membrane trafficking [BR:
nto04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104090830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
Clathrin
VPS8_N
WD40_CDC20-Fz
TPR_VPS8_2
ANAPC4_WD40
Beta-prop_EML_2
WDR55
Beta-prop_EML
zf_RING_Vps8
Beta-prop_HPS5
WD40_Prp19
Beta-prop_RIG_2nd
WD40
WD40_WDHD1_1st
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
104090830
NCBI-ProteinID:
XP_009594307
LinkDB
All DBs
Position
5:complement(33931561..33950909)
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AA seq
1878 aa
AA seq
DB search
MELDLDSFLESHADDDDDDHLLHHRTVDEILLNHSSSSSSSSSSPSPPSSPSAAHGHNYL
DRRSRSVDSSSQSAEPRPESISSKQSSEFFSPPAGQTVLPPFFNGVIRSNSKPGDAFAAA
AAASRSIPAPRAAAIKSRRASSAVLQRALETDASASIAPPSRNDTNVSDKNLDTFGRSGF
LHEIGSENIDLTSKEVSTVDAGQDNTSVAGDDVSEMDEFSNKSNLKEAPNYTGSLVEFPT
RTEKDFIFNESSRLDEIEDRQVQSLSGGEDNVTSADSSEEAATNEILSSPVYGSPSDKTE
KDGVKHELENVISQSKEEETCSPRDENDSLDDAASIIEELVLQGESMRDSTTPLKKYHSA
LKPLELAEEAEKKQAFTAMHLEEGAAAQPMRLDGVHRGSNVLGYFDVDDNNTITQTLLSQ
AFRREHGSSQALAVHLNYIAVGMSRGSILVMPSRYSPHHADDMDAKMLIFGLPRDRPQVP
VTSLSFNQQGDLLFAGYGDGHYTVWDVQRASVLKVVTEHKAPVVHLLYLGQDSQVTRQFN
VLSGDTKGVVKLSRFKVLPLINMISLSKSQEILTENNSTTICAVPLLSGESYGGAMVASL
DGGNPSLIEEGVVIFGTHQYALVAKISPTFKVYAKIARSDGVREGSMPYAAWKKSESMSI
ETSENVSLLAIAWDQSVQVAKLVKSELKVCWKWTTDSSAVGLAWLDEQILVILTATGRLC
LFSKDGNLIHQRSFALDGSCGDDVMSYHAYFSNAFGNPEKAHHNCLGVRGETLYILRPSQ
LVVSRLLSWKERIEVLHKGGDWTSALNMAMSLYDGRAQAVIDLPSNLDDVQKILIPYLVQ
LLLSYVDEVFSYIAVASGNQHGQSGQSNESKYDADFVHPDIKEQYTVVGGVSVEFCLHIK
RLDVLFDEIFPKFDAVNHKDTFLELLEPYILKDMLGSLPPEIMQALVEHYSTKGWLQRVE
QCVLHMDMLSLDFNQVIRLCREHRLHGALIYLFNKGLDDFRTPLEELFLILRDSKRESAT
TLGYKMLVYLKYCFQGLAFPPGRGTLPPTRVPSLKRELVQFLLEEASSPNSSTAMCLPYS
GPHPNLLSLLELDTEATLDVFRYAFVEGGNESFSPAWNPANLKTETTEVDILAIEGENLV
QKVVDVLAAILDMSYFQTGGSFNSKDERCTDIWPTKKDIEYILDFISFFITFEKATVSKD
TLRQILEYLTLGNETYPNVSRRIVETFNRRQKQLTALLEVLPEEDWDAHYLLNLCEKGQL
HQVCGLIHAIRHQYLSALDSYMKAVDEPILAFIFIDSMLRQPRGKESDAFRSAVISRIPD
LLKLNREGTFFLIVNHLGEEKDYILSQLRSNPESLFLYLKTLIEVHSTGTLNFSSLRKDN
ASDFRGSKRLMSSEMYLETLSDLPKLLQNYPIHITDEMTELYIELLCRYEPKSVLGFLET
FESYRVERCLRLCQEYGIVDAAAFLLERVGDIGSALLLVISSLNEKFILLDTAVESKHSD
AAPEHFKATLSKKEVTVILDILRTCIGLCQRNSPRLDPDEAESLWFQLLDSFCEPLMDSH
DHSKIRYKEEECMQEGQQACKIQWKVSKSHRNAHILRKLLSVFIKEIIEGMIGYVSLPRI
ILKLLSDNETQEFGDFKPTILGMLGTYDFERRILDTAKSLIEDDTYSSLSLLKRGASHGF
APRSLLCCICNCPLTKDFSASSIQIFSCGHAIHLQCEPQGNEASCRGNSAGCPICMPRKN
SERLRSKSVLVENGLVKTLSKSHQTHGMTALHPHENDGFDNFYGLQSISRFDLLLNLQKN
NQSMQIENIPQLRLAPPAVYHEKVKKRNVPSAGESSNGLAKMEKPSRSKHLRDVKLKGSS
LRFPLKSKVFGKEKNIKL
NT seq
5637 nt
NT seq
+upstream
nt +downstream
nt
atggagcttgacctcgattcgtttttagagtcacatgctgatgacgacgacgatgatcac
ttactacatcatcgcactgttgatgaaattctcctcaaccactcctcctcctcttcttct
tcttcttcttcaccttctcctccttcttcgccatctgctgcacatggacacaattatcta
gatcgtcgcagtcgctctgtagactcgtcttcccaatctgcagagccaagacctgagtca
attagtagcaaacaatccagtgaatttttttcaccaccggcaggccagactgtgttgcca
ccattttttaatggggtcatcagatcaaattcaaagcccggggatgccttcgctgcggca
gctgctgcatcacgctccattcctgcacctcgtgcagcagccatcaaatccagaagagca
agctctgcagtgttgcaaagggctttggaaactgatgcatcggcttccatagctcctcca
tcccgtaatgataccaacgtttcggacaaaaatcttgatacgtttgggcgctcagggttt
ttacacgagattggttctgagaatattgacttgactagtaaggaggtttctacagtggat
gcaggtcaggataatacgagcgttgctggagatgatgtttctgagatggatgaattttca
aataaaagtaatttgaaggaagctccaaattatactggatctctagtggaatttcctact
agaactgaaaaagactttatttttaatgagagctctaggctggatgagattgaagatagg
caagttcaatctttatctggaggtgaagataatgttacaagtgctgatagcagtgaagaa
gctgctacaaatgagatactctcttctccagtttatggcagtccttctgacaaaactgaa
aaggatggtgttaaacatgagcttgagaatgtaatttctcaatctaaagaggaagagacc
tgttcccctagagatgaaaacgattctctagatgatgctgcaagtatcattgaggagtta
gttctacaaggggaaagtatgagggatagtacaacgcctctgaaaaaataccactctgcc
ttgaagcccttagaattggctgaggaagctgaaaagaagcaggccttcacggctatgcac
ttggaagaaggtgctgctgctcaaccaatgaggcttgatggagttcataggggttctaat
gtcttgggttactttgatgtagatgataataacactattactcaaaccctgttatctcaa
gctttcaggcgagaacatggatcttcgcaggccttggctgttcacctcaactacattgct
gtgggaatgtccagaggatcaattcttgtgatgccaagcagatactctccacatcatgct
gatgacatggatgctaagatgttgatttttgggttgccgagagatagacctcaagtccct
gtaacttccttgagctttaatcagcaaggggacttgctctttgcaggatatggtgatggg
cattatactgtatgggatgtgcaaagggcctctgtgcttaaagttgtcactgaacataaa
gctccagtggtgcaccttttatatttagggcaggattctcaagttactcgtcagtttaat
gtgctcagcggtgatactaaaggtgtagttaagttaagccggtttaaagtgcttcccttg
atcaatatgatctccctttcgaagtcacaggaaatactaacggaaaacaatagcactaca
atatgtgctgtgccactactatctggtgaaagttatggaggtgcaatggtggcttctcta
gatggaggcaacccttctttgattgaggaaggtgtggtcatatttggcacacaccaatat
gctctagtggcaaaaataagccccacatttaaagtttatgctaaaattgcacgctctgat
ggtgttagggagggttcaatgccatatgctgcttggaagaaatcagaaagtatgtccatt
gaaacatcagaaaatgtttcactgcttgcaattgcttgggatcaaagtgttcaggttgct
aagctggtgaaatcagagctaaaagtttgttggaaatggactacagatagctcagcagtt
gggctggcatggttggatgaacagattttggtaattctcacggcaactggacgactttgt
ttgttttcaaaagatgggaacttgatccaccagagaagttttgctctggatggatcttgt
ggagatgatgtcatgtcataccatgcctacttcagcaatgcttttggaaaccctgagaaa
gcgcatcacaattgtttaggtgtcaggggggaaactttgtacattctgcggccatcccag
cttgttgtttcacgccttctttcctggaaggaacgaatagaggttttgcataaaggaggt
gactggacgagtgcgctgaacatggcaatgtctctttatgatggtcgagcacaagcagtt
attgaccttccaagtaatttggatgatgttcagaagattcttataccatatcttgtacag
ttgctgttgtcatatgtagatgaggtattctcctacatagcagtggcatctggcaaccaa
catgggcagtcaggccaatcaaatgaatctaagtatgatgctgactttgtgcatcctgat
attaaggagcagtacactgtggttggtggtgtttccgttgaattctgtcttcatatcaag
agacttgatgttctctttgatgaaatttttccgaagtttgacgctgtgaatcacaaggat
acttttttggagcttctggagccatatattttgaaagacatgttaggatctttaccacct
gagataatgcaagcactagtggagcactatagcactaaaggttggttacagcgtgttgaa
cagtgtgtcctccacatggacatgttgtccctggatttcaatcaggttattcgcctatgc
agggagcataggctgcatggtgcattgatctacttgtttaacaaaggtcttgatgatttt
aggactcctttggaagagctctttttaattttgcgggatagcaaaagagaaagtgctact
actcttgggtataagatgctcgtttacctcaagtactgcttccaaggtcttgcttttcct
ccagggcgtggaactctccctcccacacgtgtgccgtctcttaaaagagagcttgtgcag
tttttgttggaggaagcgagttctccaaattcttctacagcaatgtgcttaccatacagt
ggaccgcacccaaacctgctctctctgttagagctcgacacagaggccaccttagatgtt
ttccgatatgcatttgtagaaggtggaaacgaaagtttcagtcctgcatggaatccagct
aatttaaagacggaaacaactgaagtagacattttagctattgaaggcgaaaacttagtt
cagaaagtagtagatgttcttgctgccattcttgatatgagttatttccaaactggtggt
tcttttaacagtaaagacgaaagatgtactgacatttggcctacaaagaaagatatcgag
tacatattagattttatttccttttttattacctttgaaaaagctacggtttcaaaagat
acccttcgtcaaattcttgagtatctgacactggggaacgaaacttaccccaatgtgtct
aggcggattgttgaaaccttcaacagaagacagaagcaactgactgcacttttagaagtt
ttgccagaggaagactgggatgcacattacttactgaatttatgtgagaagggtcaactg
catcaggtctgcggcttaattcatgccatccgacatcagtatctttctgctttggacagt
tatatgaaagctgttgatgagcctattcttgctttcatatttattgatagcatgttgcgg
caaccgagaggcaaagaatctgatgcttttagatcagcagtcatttctcgaatccccgat
ctactcaagttgaacagggaaggaaccttttttctgattgtcaatcatttaggagaggag
aaggattacattttgtctcagctgcggtctaatccggaaagtcttttcctttatctgaag
acgctcattgaagttcattcaacaggcaccctaaacttctcttctctaagaaaagataat
gcttcagactttcgtggaagcaagagacttatgtcctctgaaatgtacctggaaaccttg
tctgacttacctaagctcctgcagaattatccaattcacataactgatgaaatgacagag
ctttatattgagctgttatgtaggtatgagcctaagtcagtccttggatttttggagact
tttgaaagctatagggtggaacgctgcttgcgtttgtgccaggagtatggaattgttgat
gcagctgctttcttgttagaaagggttggtgacattggaagtgcccttttgcttgttata
tcttcacttaatgaaaaattcatcctgcttgatactgctgttgaaagtaaacactctgat
gcggctcctgagcatttcaaagctactttaagcaagaaagaggtcactgtcatactagat
attttgcgcacttgtattggactgtgccagagaaacagcccccgattggaccctgatgaa
gcagagagtctctggtttcaattgcttgattctttttgtgagcctttgatggattcacat
gatcacagtaaaataaggtacaaagaagaagaatgcatgcaagaaggtcagcaggcttgc
aaaattcagtggaaggtgtcaaaatctcatagaaatgctcacatcctcaggaaattgctt
tctgtgtttatcaaagagattatcgaaggaatgattggatatgtaagcctcccaaggatc
atactaaagcttctttcagataatgagacacaggaatttggtgatttcaaacctactata
ctggggatgcttggaacatatgattttgagaggcggattttggacactgctaaatcattg
attgaagatgatacttattcctccttgagcttactgaagagaggagcttctcatggattt
gcaccgcggagcctcctatgttgcatttgtaactgccccctcacaaaagatttctcagct
tctagcattcaaattttcagctgtggtcatgcaatacatctccaatgcgaacctcaggga
aatgaagcttcatgcaggggaaactcagctggatgtcctatttgtatgccaagaaagaat
tcagagaggttgagaagtaaatccgtgcttgtggagaatggattggtgaagactctatca
aaatctcatcaaacacatgggatgactgctcttcatccccatgagaatgatggtttcgac
aacttctatggactccagtccatttcaaggtttgacctcctgcttaatcttcaaaagaac
aatcagtcaatgcaaatagagaatatccctcagttgaggcttgcaccacctgctgtgtac
catgaaaaggttaagaaaagaaatgttccctcagctggagaaagcagcaatggtctggcg
aaaatggagaaacccagcaggagcaagcatctcagagatgtaaaacttaaaggatcatct
ttaaggttccccctaaaatcaaaagtatttggtaaagagaagaacattaagctgtga
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