Nicotiana tomentosiformis: 104091054
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Entry
104091054 CDS
T05025
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03020
RNA polymerase
nto03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104091054
09124 Replication and repair
03420 Nucleotide excision repair
104091054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nto03021
]
104091054
03400 DNA repair and recombination proteins [BR:
nto03400
]
104091054
Enzymes [BR:
nto01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104091054
Transcription machinery [BR:
nto03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
104091054
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
104091054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
104091054
NCBI-ProteinID:
XP_009594602
LinkDB
All DBs
Position
2:48314705..48323056
Genome browser
AA seq
1846 aa
AA seq
DB search
MDLRFPFSPAEVAKVRVVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI
DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK
FKQAMRIRNPKNRLKKMLDACKNKTKCEGGDEIDVRGEEPEAPVKKSRGGCGAQQPKISI
DGMKMVAEYKLQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
LLRYSAWHNDSEKGPITPGDTQVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISNAKSKVKELIKAAQEKQL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK
LDSLKAKKLTFDDMYAYEIDDPNWNPSYMLPEAIEDLKTIREIRSVFDAEVQKLQADRKQ
LGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRRSDMHPMEIVEAVDKLQERLKVVP
GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI
DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGFKAE
TEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGS
YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYL
RGVTENIMLGQLAPIGTGGCALYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGTP
YHDGMMSPNYLLSPNMRMSPITDAQFSPYVDKMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSARYSP
SLAYSPTSPKLSPSSPYSPSSPSYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGTSPDYS
PSSPQYSPSAGYSPSAPGYSPSSTSQYTPRTSDKDNKSVKDDKTGH
NT seq
5541 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcgcttccccttctcgccggctgaggttgccaaagtccgtgtggtccagttc
ggcatagtcagccccgacgaaattagacaaatgtcagtggtccacattgagcatggtgag
accacggagagagggaaaccaaagcctggaggtttgagcgatcctcggctcgggacaatt
gatcgaaagatgaagtgcgagacgtgtatggcgaacatggcagagtgtccagggcatttt
ggtcaccttgagctagcaaaacctatgtttcatatcggatttatgaaacctgtacttagt
atccttcgttgcgtctgcttcaactgctcgaaaattctggcagatgaggacgatcctaaa
ttcaagcaagccatgagaataagaaatcctaaaaacaggctgaaaaagatgctggatgct
tgcaaaaataaaacaaagtgtgaaggaggggacgaaattgatgttcgaggcgaagagcct
gaagcacctgtcaagaagagtagaggtggctgtggtgcacagcagccaaaaatttcaata
gatggcatgaaaatggttgctgaatataagcttcagaagaaaaagagtgatgacccagag
cagatgccagaaccagttgaaaggaaacaacaactctctgctgaaagggtgctgagcatt
ctgaagagggtaagtgacgaagattgtctgttgcttggcctaaaccccgagtatgctcgc
ccagattggatgattcttcaagtgcttcctataccaccaccacctgttcgaccttctgta
atgatggatacttcgtcaaggagtgaggatgatttaacacatcaactggccatgattatt
cgtcacaacgagaatttgaagaggcaggaaaggaatggggcaccggcacacatcatttca
gagttcgcacagttattgcaatttcatatagctacatattttgacaatgatctgccggga
caaccaagagctacgcaaagatcaggtagacctattaaatcaatatgtagtagattaaaa
tcaaaagaaggtcggatcagaggcaatctgatgggcaaaagagtagacttttctgctcgg
acagttattactcctgatccaactattaacattgatcaattgggagtcccgtggagtatt
gctctgaatctcacttatccagaaacagtgacaccatataacattgaaaggttaaaggag
cttgttgaatatggacctcatccacctcctggtaaaactggggcaaagtatataattagg
gatgacggccaaaggcttgatctccgatacctgaagaagagcagtgatcagcatcttgag
ctaggatataaggttgagaggcacttaaatgatggggactttgttctcttcaatcggcaa
cccagtctacacaaaatgtccattatggggcataggatcaagatcatgccatactcaacc
ttccggttgaatttatctgtcacttctccttacaatgctgattttgatggtgacgaaatg
aacatgcatgttccccagtcatttgaaaccagagcagaagtgctggagcttatgatggtc
cccaagtgtattgtttcaccccaggcaaataggcctgtaatgggtatcgtgcaggatacc
cttttaggttgccgaaaaatcactaaaagagatacctttatagaaaaggatgtctttatg
aacattttaatgtggtgggaggattttgacgggaaagtacccgcgccggcgattctgaaa
ccaaggccactttggaccgggaagcaagtgtttaacctcatcataccgaaacaaataaat
cttctacgatattctgcgtggcataatgattcagaaaaaggacccataactccaggagat
actcaagttagaatagagaaaggggagttgctaactggtactctttgcaaaaagaccctt
gggacgtccactggaagtctgattcatgttatatgggaggaggtcgggccggatgctgct
cgcaagtttctgggacatacacaatggctggttaattattggcttcttcagaatgctttt
agcattgggataggagacacaattgctgatgcttcaaccatggagaaaattaatgaaact
atctcgaatgcaaaaagcaaagtcaaagaacttatcaaagctgctcaagagaagcagtta
gaagctgaaccagggcgaactatgatggaatcattcgagaacagagtgaaccaggtgttg
aataaagctcgtgatgatgcgggaagcagtgccgagaagagtttatcagaaagcaacaat
cttaaagctatggttactgctgggtccaaggggagttttattaacatatctcaaatgact
gcttgtgtggggcaacagaatgttgaagggaaacgtattccttttgggttcatagaccgt
actctacctcattttaccaaggatgattatggtccagaaagtcgtggttttgtggagaat
tcatatctccggggactgacccctcaggagttcttcttccatgctatgggtggtagagaa
ggtctaattgatactgctgtgaaaacttctgagaccgggtacatccagaggcgattagtg
aaggccatggaggatatcatggtcaagtatgatggtactgttaggaattcattgggtgat
gttatccagtttctgtatggggaagatggcatggatgctgtttggattgagacgcagaag
ctggattctctgaaagcaaagaaattaacattcgatgacatgtatgcatatgagatcgat
gatcctaactggaacccaagttacatgttgccagaagctatcgaagatctaaaaactatt
cgggagattcgtagtgtgtttgatgcagaggttcagaaacttcaagctgatagaaaacag
cttgggacagagattgctgtaacgggtgacaattcttggccgcttcctgttaacattcag
aggcttgtcttgaatgcccaaaagacatttaagatagattttcgaaggcggtctgatatg
catcctatggagatcgtggaagctgttgataagttacaggagaggcttaaggttgtccct
ggcgatgattacctaagcatggaagctcagaagaatgctactcttttcttcaatatcttg
ctccgtagtgccttggctagtaaaagggttctgaaggagtatagacttagtcgggaggct
tttgactgggtaattggtgagatagagtctcgcttcttgcaatcccttgtggcaccagga
gagatgattggctgtgtcgctgcacagtcaattggtgagcctgccacacagatgactctt
aatacatttcattatgctggtgtgagtgctaagaatgttactctgggtgtgccaaggttg
agggaaatcatcaatgttgccaagaaaattaaaacaccctctctttctgtgtacttgaaa
cctgaagtaggcaaaacaaaagagagggccaaaactgtccagtgtgccttagaatatact
actttgcggagcgtaacacaagccacagaagtgtggtatgatccagaccccatgagcacc
ctcattgaggaagatgttgaattcgtcaagtcgtactatgaaatgccagatgaagagatc
gaccctgacaaaatttccccatggttgcttcgcatagagttaaatcgtgaaatgatggtg
gataagaaacttagcatggctgacattgctgaaaagatcaaccttgagtttgatgatgac
ttgacctgcatctttaatgatgataatgcggaaaagctgatccttcgaattcgtattatg
aatgatgaagctccaaaaggtgaactggatgaatctgctgaggatgatgtcttccttaag
aagatcgagagtaatatgcttacggagatggctctcaggggaattccagatattaataag
gtgttcataaagaatagtaaggtacagaagtttgatgacaatgaaggatttaaagcagaa
actgaatggatgctggacactgaaggtgtgaatcttttggctgtcatgacacatgaagat
gttgatgcaaggagaactacaagtaaccacttgattgaagttattgaagttcttggaatt
gaggcagtccgaagatcactgctggatgagttgagggtcgtcatatcttttgatgggtcc
tatgtgaactaccgacatctggccatattgtgtgataccatgacctaccgtggtcattta
atggccatcactcgtcatggtattaaccggaatgacactggtcccatgatgagatgctca
tttgaggagacggtggacatccttcttgatgctgctgtatttgcagaatcagattacttg
aggggtgtcacagaaaatatcatgttaggtcagcttgcaccaattggcacaggaggctgt
gctttgtacctcaatgaggagatgttgaaacaagctattgagataccattgcctagctac
atggaaggtggtcttgaatttggcatgacgcctggacgctcacctatcagtggaacccca
tatcatgacggcatgatgtctccaaattatttgctgagccctaatatgcggatgtcaccc
attacagatgctcaattttctccttatgtggataagatggctttctctcctacttcatcc
cccggatacagcccgtcatcccctggttacagcccgtcgtcccctggttacagcccgacc
tctccaggttacagccccacatccccaggttacagccccacgtccccggggtacagcccc
acttcccccacttatagccccagctctcctggctacagcccgacaagtccggcatattcc
ccaaccagtccatcgtactctcccacatcacccagttatagtccaacatctccgagctat
agccctacatctcctagttatagcccaacatcgcctagctatagccccacttctcctgcc
tacagccccacttcgcctgcctacagccccacttcgcctgcctacagccccacttctcca
tcttacagccccacttcgccatcttacagccccacctcaccttcttacagccccacctcg
ccttcatatagccccacctcaccaagttatagtccaacttctccatcatatagtcccact
tctcctgcatacagtcctacctcccctggttacagcccaacatctcccagttacagccca
acatcaccatcatatagtcctacatcaccaagttacaatccctcggctagatacagcccc
tcccttgcatattcgccaaccagtccaaagctgtctccttctagtccatacagcccgtca
tctccaagttacagtccaacgtcaccttcgtactctccaacatctccatcatattctcct
tcaagcccaacctatagtcccagcagcccatacaactcaggtacaagtccagattatagt
cctagttctccccaatacagtccaagtgcaggctactcaccaagtgctcctgggtattca
ccatcatctactagccagtacaccccgcgcactagcgataaagacaacaagagtgtcaaa
gacgacaagactggtcattag
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integrated database retrieval system
