Nicotiana tomentosiformis: 104091116
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Entry
104091116 CDS
T05025
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1-like isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03040
Spliceosome
nto04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104091116
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104091116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nto03041
]
104091116
04121 Ubiquitin system [BR:
nto04121
]
104091116
03400 DNA repair and recombination proteins [BR:
nto03400
]
104091116
Enzymes [BR:
nto01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104091116
Spliceosome [BR:
nto03041
]
Complex B
Other components
Prp19 complex
104091116
Complex C
Prp19-CDC5 complex
104091116
Ubiquitin system [BR:
nto04121
]
Ubiquitin ligases (E3)
U-box type E3
104091116
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
104091116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
NBCH_WD40
Beta-prop_HPS5
Beta-prop_TEP1_C
Beta-prop_EIPR1
U-box
Beta-prop_DCAF12
Beta-prop_DCAF4
Beta-prop_RIG_2nd
PROPPIN
Beta-prop_SPT8
PEP5_VPS11_N
zf-Nse
WD40_like
KNTC1_N
PAS_11
V_ATPase_I_N
B_lectin
Motif
Other DBs
NCBI-GeneID:
104091116
NCBI-ProteinID:
XP_009594689
LinkDB
All DBs
Position
12:127702867..127711835
Genome browser
AA seq
522 aa
AA seq
DB search
MNCSISGEVPEDPVVSMKSGLIFEKRLIERHISDYGKCPVTGEPLTKDDIIPVKTGKIVK
PRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARALLAQAERQVPMAATTTAPNGAALSNGKRAAEEEEMGPGGKKIRQGISGDVIKE
LQDCNAALSQQRKRRQIPATLAPVDAVERYTQLNSYPLHKTNKPGILSLDIHYPKDIIAT
GGVDSNAVVFDRPSGQIVSTLSGHSKRVTSVRFAAEGELVVTGSADKTVCVWQSSENGNY
DCRHTLKDHSAEVQAVTVHATNKYFVTASLDGTWCFYELASGLCLAQVADASESEGYTSA
AFHPDGLILGAGTSGALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYFLATAAQDGVK
LWDLRKLRNFRSFTPYDEDTATQSVEFDHSGSYLALGGSDIRVHQAASVKSEWNLIKTFP
DLSGTGKATCLKFGPDAKYIAVGSMDRNLRIFGLPGEDQSES
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgaactgttcaatttctggtgaggtaccggaagatccagtagtgtcaatgaaatctgga
cttatttttgagaagcgtttaatcgaaagacacatctcggattatggtaaatgtccggtc
actggagagccactgacaaaggatgacattattccagttaaaactggcaagatagtgaag
ccccgacctgtgcaggccgccagtattcctgggatgttgggaatgtttcagatagagtgg
gatggtctgatgctatccaattttgcattggaacaacaattacatactgcaaggcaagag
ctgagtcatgctctatatcagcatgatgctgcatgccgggtaattgctaggctgaaaaag
gaaagggacgaggcaagagcattgcttgcgcaggctgaaagacaagtacccatggcagca
actacaactgcacctaatggtgctgctttaagcaatgggaaaagagctgcggaggaggag
gagatgggtcctggtggtaagaaaattcgccaaggaatatcaggcgatgttattaaagag
cttcaagattgtaatgctgctctttcacaacaaaggaaaaggcgacagattcctgcaaca
ttggctcctgttgatgctgttgaaagatatacccagctgaatagttatcctcttcataaa
acaaacaaaccaggcattttgtctctggatatccattatcctaaggacatcattgctact
ggtggggttgattcaaatgctgtggtctttgatcggccttcagggcagattgtatcgaca
ctaagtggtcactcaaagagggttaccagtgtcagatttgctgctgagggtgaactagta
gttactggctctgcagataagacagtatgtgtgtggcaaagctctgaaaatggaaattat
gactgtaggcatactttgaaggatcacagtgctgaggtgcaagctgtcacagtccatgca
accaataagtactttgtgacggcttctcttgatggcacatggtgtttttatgaacttgct
tctggtttatgccttgctcaggtagcagatgcttcagaatctgagggctacacatctgca
gcttttcatcctgatggtctgatccttggagcaggaacttcgggggctctggtcaagata
tgggatgtaaaaagccaggcaaatgttgcaaaatttgatggccatgttggagcagtaact
gcaatctccttctcagaaaatggttattttttagcaactgcagctcaagatggtgtcaaa
ctttgggatttacgcaaattgagaaacttcagaagctttactccttatgatgaagataca
gcaactcaatcagtggaatttgaccacagtggaagttatcttgcattaggaggctcagat
ataagagttcatcaagctgcaagtgtcaagtccgaatggaatctcatcaaaactttccct
gacttgtcaggcacaggtaaagcaacatgtctgaaattcggaccagatgcgaagtacata
gctgttggatccatggatcggaatttaagaatattcgggctgcctggggaggatcaatca
gaaagttag
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