KEGG   Nicotiana tomentosiformis: 104091806
Entry
104091806         CDS       T05025                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
nto  Nicotiana tomentosiformis
Brite
KEGG Orthology (KO) [BR:nto00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:nto03009]
    104091806
Ribosome biogenesis [BR:nto03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    104091806
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_EML Beta-prop_TEP1_2nd EIF3I WDR55 NBCH_WD40 Beta-prop_TEP1_C Beta-prop_CAF1B_HIR1 Beta-prop_HPS5 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_Vps41 ANAPC4_WD40 Beta-prop_VPS8 Beta-prop_IP5PC_F Beta-prop_DCAF4 Beta-prop_RIG_2nd Beta-prop_IFT140_1st WDR54 Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_BBS7 Beta-prop_LRRK2 Beta-prop_SCAP PEP5_VPS11_N Beta-prop_SPT8 Beta-prop_DCAF12 Beta-prop_WDR19_2nd VPS11_N DUF4987 PROPPIN VPS8_N
Other DBs
NCBI-GeneID: 104091806
NCBI-ProteinID: XP_009595523
LinkDB
Position
4:118303596..118308292
AA seq 449 aa
MTELELVIASSPTDAGIGCWDLHTGAEHLRHRSCSSPSHGLVCVGGRFLASSQLCASKSS
SGSILYWSWNKPQVEVKSFPAEPINPLVCNNEGTYMAGGGASGDIYLWQVATGKLLKKWH
AHYRAVTCLKFNDDQSLLISGSEDGSVRVWSLIMVFDDLLRDKARQPYEYSFSEHSLKVT
DVVTGYGGANAIVVSASEDRTCKVWSLSRGKLLRNIVFPSVIDAIALDPGEDVFYAGGRD
GKIYIAAVNAVADSNSNYGLHILGFLSEQSKAITCLALTTDGGLLISGSEDGMVRVWNTK
DHNIARIFRHAKGPVNNIVVVRQPSLLSTSGSVSFQVPSVKRHGASLPPPLEKYANSADD
NDYMAVIGPRFNHDRSVEASYISVQTLNNQILELQRQGSSAAAQMEIEKLKLDRGRSIQM
IQQWEKKYQNLHQFCVTELLDGEPAGNAV
NT seq 1350 nt   +upstreamnt  +downstreamnt
atgacggagctggaattggtaatcgcgtcgtcgccgaccgacgccggtatcggctgttgg
gacctccatactggcgccgagcaccttcgtcatcggtcttgctcctccccttctcatggc
ctcgtctgtgtcggcggccgttttctcgcctcctctcaactctgtgcttccaaatcgtcg
tcaggatctatcctttactggtcctggaacaagcctcaagttgaagttaaaagctttcca
gcggaacctataaatccacttgtttgcaacaatgagggaacttatatggccggaggaggt
gcatccggtgatatatacttgtggcaggttgcgactggtaaactacttaagaagtggcat
gctcactatagggcagttacttgcttgaaattcaatgatgatcaatcgcttctgatttct
ggttcagaggatggatctgttcgagtttggtctcttataatggtatttgatgatttgttg
agggataaagcaagacagccttacgagtatagtttctctgagcattctttgaaggtgact
gatgttgtgactggttatggcggagctaatgcaattgttgtatctgcctcagaagataga
acttgcaaggtatggagtttgtcgagaggaaaattgttgagaaacattgtgtttccatca
gtaattgatgcaattgcattggacccaggagaagatgtcttctatgctggtggtagagat
gggaaaatttacatagctgcagtaaatgctgttgctgactccaacagtaattacggattg
cacattcttggttttctgtctgagcaaagtaaggctattacatgcttagcattaactact
gacgggggcttgctaatttctggatcagaggatggcatggttcgggtgtggaacactaaa
gaccataacatcgcccgaatttttaggcatgcaaaaggcccagttaacaatatagttgtt
gttagacaaccatctctcctgagtaccagtggatctgtgagtttccaagtaccctccgta
aagagacatggggcatcattaccacccccattggaaaagtatgctaactcagcagatgat
aatgattatatggcagtaattggcccccgattcaatcatgatagatctgttgaagcttca
tatatcagtgttcagacactaaataatcaaatcttagagcttcagagacaagggtcttct
gctgctgctcaaatggagatcgaaaagctaaaactcgaccgcggcaggtccatacaaatg
attcagcaatgggaaaagaagtatcaaaatctacatcagttttgtgtaaccgagctattg
gatggggaaccagctggaaatgctgtgtga

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