Nicotiana tomentosiformis: 104091954
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Entry
104091954 CDS
T05025
Name
(RefSeq) protein PAT1 homolog 2-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104091954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104091954
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104091954
mRNA degradation factors
5'-3' decay
Decapping complex
104091954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
104091954
NCBI-ProteinID:
XP_009595696
LinkDB
All DBs
Position
6:13955578..13969100
Genome browser
AA seq
817 aa
AA seq
DB search
MERSDGKDFNNLSHSSSSISDSALFDASQYAFFGRDIGEEVELGGLDEEGNSCVPSVDGG
FGDEDVQEYHLFAKDEGSALGSLSDIDDLATTFSKLNRNVTGPRHPGVIGDRGSGSFSRE
SSSAAEWEKETDFTDWFDQHLSDTECYQDSKRWSSQTHFSSVHHAESKPLYRTSSYPEQP
QQLQRFSSEPILVPKASYTSLPPPGGRSQQASPHSLLHHQSMPSLAAGPQSPYSTANLPT
LSNPNIHLAGLSHGLHYGGNMPQWTPTGLSLNTRLQNHWISHAGLLHGDHSSLLNSISPH
QFPQIGLLSPQLMSPRQLQQQRFHPSVQPSLAHFSALRSQFNSFPSPSHLGKYGSADSRD
SRSKSSNKGRQNVRFSQQASEAGSQKSESNVSKFRSKYMTGDEIESILKMQHPAIHGNDP
YVDDYYHQARLAKKAAESRSKYRFCPNKEQPSRSRNSTESQPHLHVDAKGQISFSSIRRP
RPLLEYDPPGFVCNGSGEHDMSEKPLEQEPMLAARITIEDGFYLLLEVDDIDRLLQFSQP
QDGGAQLRRKRQILLEGMAASLQLVDPLGKSGSSVGLTPKDDIVFLWLVSLPKGRKLISR
YLQLLAPGGELARIVCMAIFRHLRFLFGGHPPNPGATETITNFAKTVSACTRGMDLNLLS
ACLAAVVCSSEQPPLRPLGSPAGDGASIILKSVLEKATHLLTDPQAVSSFSMPNPALWQA
SFDAFFGLLTKYCLSKYDSIMQSILPQTPSNTETFDAEAARAVSREMPVELLRASLPHTN
EQQRKLLLNFAQRSMPVTGSNAHGGSTGQISPESVSC
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctgatggcaaagattttaacaacttgtcccactcctctagctccatctca
gatagtgcgcttttcgatgcatcacaatatgcattttttggacgagatataggagaggaa
gtcgaattggggggcctagacgaagaaggaaacagttgtgttccctcagtggatggtgga
tttggtgacgaggatgtacaggagtaccatttgttcgcaaaagatgagggatcagctttg
gggtctttatccgacatagatgatctggcaactacattttcaaagttgaacagaaacgtc
acaggacctaggcatcctggagttattggagatcgtggatcaggatctttttctagagaa
agttcgtcggcagctgaatgggaaaaggaaactgattttactgattggtttgatcagcat
ttgtctgacactgaatgttaccaggatagcaaaagatggtcttcacagacacatttctct
tctgtgcatcatgcagagtcaaaaccgttgtatagaacatcctcctaccctgagcaaccc
caacaacttcaacgcttctcaagcgaacccattttagtgccaaaggcatcttacacttct
ctccctcctcctggtggcagatctcaacaagcctcaccacacagcctattgcatcatcaa
agtatgccatctcttgctgctggacctcagtctccctattcaactgccaatctccccact
ttgtcaaatcctaatatccatttagcaggcttgtctcatgggctccattacggtggaaac
atgccacagtggacccctacgggtctttctctcaatacccggctgcaaaaccactggatt
agtcatgccggtctcctccatggggatcattctagcctcttaaatagtatatctccacat
caatttcctcagattgggttattgtcccctcagttaatgtccccccggcagctacagcag
cagagattccatccttcagttcaaccatctttagctcatttttctgcactgcgttcccaa
tttaattcctttccttcaccttcccatctgggtaagtatggatcggctgattcgagagat
tcaagatctaagtcatcaaataaaggtagacagaatgtgcgcttttctcaacaagcctct
gaagctggtagccaaaaaagtgagagtaatgtttccaagttcagatctaagtacatgact
ggtgatgaaatagagagcatcctgaaaatgcagcatcccgcaatacatggcaatgatcca
tatgtggacgattattatcaccaagctcggcttgcaaagaaagcagctgagtcgaggtca
aaatatcgtttttgtccaaacaaggagcaaccttcaaggtcacgtaatagcacagagtca
caacctcatctccatgttgatgctaaggggcagatttcattttcctccatccgcaggcct
cgtcctcttcttgaatatgatccacccggatttgtatgtaatggcagtggtgaacatgac
atgtctgagaaacctttagagcaggaaccaatgcttgcagctagaattacaatagaggat
ggtttctatcttctccttgaggtcgatgacatcgacaggctacttcagtttagtcagccg
caagatggaggtgctcagctgaggcggaagcggcagatcctgttggaaggcatggctgcc
tcacttcagcttgttgacccgcttggaaaaagtgggagttcagttgggcttacccctaaa
gatgacattgtgttcttatggctggtgtctcttccaaaaggccggaaactcatttcaagg
tatcttcagcttctggcacccggtggcgagcttgcaagaatagtttgcatggcaattttt
cggcatttaaggtttttgtttggcggtcatccacctaatccaggagccactgagacaatt
actaattttgcaaaaacagtctctgcatgtacccgtggcatggaccttaatttgcttagt
gcttgtctagctgctgttgtttgttcctcagagcagccgcctcttcgtcctcttggaagc
cctgctggagatggagcctctattattcttaaatctgttcttgaaaaggcaactcatctc
ttgactgatcctcaggctgttagcagcttcagcatgcctaatcctgctctttggcaggca
tcatttgatgccttttttggtttacttactaagtattgcttgagtaagtacgactcaata
atgcaatcgatacttccacagactccgtcaaacacagaaacgtttgatgcagaagctgca
agagctgtaagcagagagatgccggtcgaacttttacgtgctagtctcccgcacacaaat
gagcagcagaggaagctgttgttgaattttgctcagaggtccatgcctgtgactggatcc
aatgctcacggtggaagcactggacaaataagtcctgaatctgtaagctgttag
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