Nicotiana tomentosiformis: 104092219
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Entry
104092219 CDS
T05025
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 16 isoform X1
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
nto
Nicotiana tomentosiformis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nto03009
]
104092219
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104092219
Ribosome biogenesis [BR:
nto03009
]
Eukaryotic type
Pre-60S particles
Helicases
104092219
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
104092219
NCBI-ProteinID:
XP_009596050
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All DBs
Position
2:58472391..58479352
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AA seq
593 aa
AA seq
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MNKVEERAEEEEEEQSFEELGVDPRLIRALTKKSILKPTPIQRVAIPLILEGKDVVARAK
TGSGKTFAYLLPLLQKLFTTQSPSNMNLAPTALILVPTRELCQQVCSEANSLIELCRVQL
RLVQLTSSMSVSELRTTLAGPPEIVVSTPACIQTCLKNGIIQAKAVQDSLSILILDEADL
LLSYGYEDDLKALTSHVPRRCQCLLMSATSSSDVEKLKKLILHNPYILTLPEVGDTKDDI
IPKNVQQFYISCAARDKLVHILALLKLELVQKKVLIFTNSIDMSFRLKLFFEQFGIKSAV
LNAELPQSSRLHILEEFNAGLFDYLIATDESQSDGKEQVDDQNGSERKKSKKHRKHKLDA
EFGVVRGIDFKNVYTVINFEMPQTAAGYVHRIGRTGRAYNTGASVSLVSAEETEIFEEIK
SLLGENDDKVSQFIAPFPLLSKNAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSE
KLKAHFQDNPKDFDLLKHDKMLSKKAPAPHLRDVPDYLVDPTTQEASKIVKLARAAMGNT
NASRGKGSKGRFKKSRDPLKTFSAEAPKRAGKGGMKRKAKDADNGHKYKKKHS
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaagtagaagaaagagcagaggaggaagaagaggagcagagcttcgaggaatta
ggagttgatcctcgtcttatccgtgccttaaccaagaaatctatcctaaaacctacccct
attcagcgtgttgctattccccttatcctcgaaggcaaagatgtggttgcccgagctaag
actggctccggaaagacctttgcttatctccttcctttacttcagaagctctttactact
cagtcaccttcaaacatgaatcttgcacccactgctttaattcttgtacccactagggaa
ctgtgccaacaggtttgttcagaggccaattcgttgattgaattatgtagagtgcaattg
aggcttgtccaattgactagttccatgtctgtttctgaattgagaactacattggcgggg
cctcctgaaattgttgtatctactcctgcttgtatacagacatgcttgaagaatggaatt
attcaagcaaaagctgttcaggattctctctccattctcattctcgatgaggcagacctt
cttttgtcatacggatatgaagatgatctgaaagctcttacatctcacgtaccaagacgt
tgccagtgccttctgatgtctgcaacctcaagttctgacgttgaaaagctgaaaaagctt
attttacacaatccctacatcttaactttgcctgaagtcggtgacacaaaggatgacatt
ataccaaaaaatgttcagcaattttatatttcttgtgctgctcgtgataagcttgtccat
atccttgccctcttgaagctagagttggttcagaaaaaagtgctgatatttacaaattca
attgacatgagttttagactcaaactattctttgagcagtttgggatcaagtctgcagta
ttaaatgcggagctgcctcagagttctcgtctacacatccttgaggaattcaatgctggg
ctatttgattacttgattgcgactgatgaaagtcaatcagatggaaaggaacaggtcgat
gatcaaaatggcagtgagcggaagaaatcgaaaaaacaccgaaaacataaattggatgca
gagtttggcgtggttagagggatagacttcaaaaatgtgtatactgtgataaattttgag
atgcctcaaacagctgcaggctatgtacatcgaattggacgtactggaagagcatataat
actggagcatctgtctctcttgtttctgctgaagagacagaaatatttgaagagattaaa
tctttacttggggaaaatgatgataaggtgtcacagtttattgccccattcccgttgctg
agtaagaacgcagtggagtctttgcgttaccgagccgaggatgttgcaaggagtgtcaca
aaaattgctgtaagagaatcacgggctcaggatctgaggaatgaaattcttaattctgaa
aagttgaaggcgcattttcaagataatccaaaagacttcgatctcttgaagcatgataag
atgttaagtaagaaggctcctgccccgcacctacgtgatgtacctgactacctagtggat
ccaacaacacaggaagctagcaagattgtgaagcttgccagagctgcaatgggcaatact
aatgcatctcgtggcaaaggatcaaagggaaggttcaaaaaaagcagagaccctcttaaa
acattttcagctgaggcaccgaagcgagcaggaaaaggtgggatgaagagaaaggcaaaa
gatgctgataatggccacaaatacaaaaagaaacactcttaa
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