Nicotiana tomentosiformis: 104092354
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Entry
104092354 CDS
T05025
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
nto
Nicotiana tomentosiformis
Pathway
nto04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104092354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nto04131
]
104092354
Membrane trafficking [BR:
nto04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104092354
Hops complex
104092354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_C
Clathrin
zf-C3H2C3
TPR_Vps41
Beta-prop_EML_2
ANAPC4_WD40
zf-C3HC4_2
zf_RING_Vps8_fungal
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
104092354
NCBI-ProteinID:
XP_009596241
LinkDB
All DBs
Position
6:complement(121045302..121052827)
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AA seq
954 aa
AA seq
DB search
MYQWRKFEFFEEKFSGKVADDITGKIQCCSSGKGRIVLGCDDGSASLLDRGLKFNYGFQA
HSSSVLFLQQLKQRNFLVTVGEDEQISPQSSAVCLKIFDLDKMEPEGTSTSSPDCIQILR
IFTNQFPEAKITSFLVLEEAPPLLLIAIGLDNGSIYCIQGDIARERIKRFKLQVDNHSDK
SQSSITGLGFRVDGQMLQLFAVTPNSVNLFNMHTQSPTRQTLDQIGSSVTSVAMTDRSEF
IIGRPEAVYFYEVDGRGPCWAFEGEKKFLGWFRGYLLCVFADQRTGNNTFNIYDLKNRLI
AHSMVVKEVSQMLCEWGNIILILEDKSTLCIGEKDMESKLDMLFKKNLYTVAINLVQSQQ
ADAAATAEVLRKYGDHLYSKQDFDEAMAQYIHTIGHLEPSYVIQKFLDAQRIHNLTNYLE
KLHEKGLASKDHTTLLLNCYTKLKDVEKLNEFIKSEDGVGEQKFDVETAIRVCRAANYHE
HAMSVAKKAGRHEWYLKILLEDLGRYEEALKYISSLELSQAGVTVKEYGKILIEHKPAET
VEILMRLCTEESELPKKGASSSAFISMLPSPIDFLNIFVHYPQALLEFLEKYTSKVKDSS
AQVEIHNTLLELYFSHDLDFLSISQSNIDESGNDLAHKPLKAVSDGRAIPDKNDLNDEKG
RQERRQKGLALLKSAWPSEVEQPLYDVDLAIILCEMNAFKEGLLFLYEKMKLYKEVIACY
MQVHDHEGLIACCKRLGDLGKGGDSSLWADLLKYFGELGEDCSKEVKEVLTYIERDDILP
PIVVLQTLAKNPCLTLSVIKDYIARKLERESQLIDEDRRSIEKYQEESSTMRKEIQDLRT
NARIFQLSKCTTCTFTLDLPAVHFMCMHSFHQRCLGDNEKECPECAPEYRAVLETKRSLE
QSSKNPDQFFQLVKSSKDGFSVIADYFGKGIISKTSNGHAEALRSGSASSGNDF
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgtatcagtggaggaagtttgaattctttgaggagaagtttagtgggaaagtagcagat
gatataacgggaaagatccaatgttgttccagcggtaaaggaaggattgtattgggctgt
gatgacggctccgcttccttattggatcgaggattgaagttcaattatggtttccaagct
cattcttcctctgtcctcttccttcaacagctcaagcaaaggaacttcttagtgaccgtt
ggagaagatgagcaaatatctccccagtcctcagctgtttgtcttaaaatttttgatctt
gacaagatggagcccgagggaacaagtacatcaagtccagattgtattcaaatactgcgt
atatttaccaaccagttccctgaagcaaagattacgtcatttttagttctggaggaggct
ccaccattattactcatagctatagggctggacaatggttccatctattgcattcaagga
gacatcgcccgtgaacgcatcaagcgctttaagcttcaggtggataatcattcagacaaa
agtcaatcctccattacaggtcttggtttcagagtggatggtcagatgcttcagctgttt
gctgttactccaaattcggtaaacctgttcaacatgcatactcaatcacctacccggcag
actcttgatcagattggatccagtgtaactagtgttgcaatgactgatcgatcggaattc
attattggtcggcctgaggcggtatatttctatgaagtggatggccgtggtccttgttgg
gcctttgaaggagagaagaaattccttgggtggtttcgcggataccttctgtgtgttttt
gcagatcaaagaactggaaacaatactttcaatatttatgatctgaagaaccggttaatt
gcccacagtatggtggttaaagaagtttctcagatgctttgtgaatggggtaacataata
cttattttggaggacaaatcaactttatgtattggggagaaagatatggagagcaaattg
gatatgcttttcaagaaaaacctttatacagttgctataaatctagtccaaagccagcaa
gctgatgccgctgcaactgctgaagtgcttaggaaatatggcgatcacttgtacagtaaa
caagactttgatgaggctatggctcagtatatacacaccattgggcatctagaaccttcg
tatgtcatacaaaaatttttggatgcccaaagaatccacaatctcaccaattacttggaa
aaattgcatgagaaggggcttgcctcaaaagatcataccactcttttattaaattgttac
accaaattgaaagatgttgagaagcttaatgagttcatcaaaagtgaggatggggttggg
gaacaaaagtttgacgttgaaactgcaataagggtatgcagagctgccaattatcatgag
catgccatgtctgttgctaagaaagctgggaggcatgaatggtaccttaaaattttgctt
gaagatctaggtagatatgaagaagctttaaaatatatcagcagccttgagttgagtcaa
gctggggtgacagtgaaagagtatggcaaaattcttattgagcataagccagctgaaaca
gttgaaatacttatgaggctttgcacagaggaatcggaactgcccaagaagggagcatca
agtagtgcatttatctccatgttgccttctcctattgattttctcaacatttttgtccat
tacccacaggcacttctggagttccttgaaaaatataccagcaaagtgaaggattcatct
gctcaagtggaaattcataacacgctcctggaattatacttctctcatgatctggatttc
ctgtcaatttcacaatctaacattgatgaaagtggaaatgatttagcacacaaaccatta
aaagcagtatccgatgggagggcgataccagacaagaacgacttaaatgatgagaaaggt
cgtcaagagcgacgtcagaaggggctggccttgcttaagagtgcatggccttctgaagta
gaacaaccactatacgatgttgatcttgccataattttatgcgagatgaatgcctttaaa
gaaggactgctgtttctttatgagaagatgaaactttacaaagaagttattgcatgctac
atgcaggtacatgatcatgaaggtttgatagcatgctgcaagagattgggtgatttgggt
aaggggggtgattcttctctttgggcagatttgttgaagtattttggtgaacttggagaa
gactgctcaaaagaagtcaaagaagtattgacttacattgagagggatgatatcttgcct
cccattgttgttcttcagacacttgccaaaaatccgtgcctcactctctctgttatcaaa
gattacatagctcgaaagttagaacgggagtctcagctgattgacgaagaccgcagatct
atagagaagtatcaggaagaatcatcaacaatgagaaaagagatccaggatctaagaaca
aatgctagaatttttcagcttagcaagtgtactacttgcacgttcacactcgaccttcct
gctgtacacttcatgtgtatgcactcatttcatcagcgctgccttggcgacaatgagaaa
gaatgccccgagtgtgctcccgagtacagagctgttctggaaacaaagagaagcttggag
caaagttccaaaaacccagatcagttcttccaactggttaagagctctaaggatggattt
tccgtaattgctgattattttggcaaggggattatcagcaaaactagcaacgggcatgct
gaagctcttagatcaggcagcgcttcttccggcaatgatttctag
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