Nicotiana tomentosiformis: 104092586
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Entry
104092586 CDS
T05025
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104092586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104092586
03012 Translation factors [BR:
nto03012
]
104092586
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104092586
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104092586
Translation factors [BR:
nto03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104092586
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
R3H
DEAD
HA2_C
HA2_N
ATPase
Ank_2
nSTAND3
AAA_19
AAA_22
Ank_5
ResIII
AAA_7
ABC_tran
Rad17
AAA_23
AAA_16
NPHP3_N
Sigma54_activat
NACHT
Motif
Other DBs
NCBI-GeneID:
104092586
NCBI-ProteinID:
XP_009596511
LinkDB
All DBs
Position
7:complement(7631390..7642023)
Genome browser
AA seq
1207 aa
AA seq
DB search
MASTATGASPSSSGFGKKRQKKGQRLQEVTNVAESTRIRVAQVLEQFRASNDEVYTFESN
LSNRDRAAVHMLCRKMGMKSKSSGRGDQRRISIFKTKNTVETLEGKDALSFFKFSGEAKD
VLQDLFTKYPPDNGETSEQVVGKHSKKVDKYRGKKDDVFCKPAMNKSEIAKRAESLASRI
ENTPNLRQITVQRSKLPIASFKDVITSTVESNQVVLISGETGCGKTTQVPQFILDHMWGK
GETCKIVCTQPRRISATSVSERISAERGESVGDTVGYKIRLESRGGKHSSIVFCTNGVLL
RVLVTKGSASFNKKAPRKMGTDDISDITHIIVDEVHERDRYSDFMLAILRDLLPSYPNLR
LVLMSATLDAEHFSKYFGGCPIIRVPGFTYPVKTFYLEDVLSIVKSTENNHLDSTSTTVM
SEESTLTEEYKVALDEAINLAFSDDDLDPLLDLISSDGGPKVFNYQHSLSGVTPLMVFAG
KGCIGDICMLLSFGADCHLSANDGKNALDWAERENQTEAAELIKKHMEKSSSNCEEQQHL
LDKYLSTVDPELIDDVLIEQLVRKICIDSEDGAILVFLPGWEDINRTRERLRSSQYFKDT
SKFSVIALHSMVPSVEQKKVFRRPPPGCRKIVLSTNIAETAITIDDVVYVIDSGRMKEKS
YDPYNNVSTLQSSWVSKASAKQREGRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRIPI
EELCLQVKLLNPDCKIEEFLKKTLDPPVYETIRNAIIVLQDIGALSVDEKLTELGERLGS
LPVHPLTSKMLLIAILLNCLDPALTLACASDYRDPFTLPMLPNEKKRASAARAELASWYG
GRSDQLAVVAAFEGWKSAKESGQESRFCSTYFVSSSTMNMLSGMRKQLQSELLRNGFIPG
DGSSCSLNAQDPGILHAVLVAGLYPMVGRLLPPLKGGKRAVIETAGGDKVRLHPHSTNFK
LSFKKFCDRPLIVYDEITRGDGGLHIRNCSVIGPLPVLLLATEIVVAPGIEEDDDDDDDN
DDDESDYEDADEDDGEEDNIKADQGQKVMSSPENTVKVIVDRWIPFESTALDVAQIYCLR
ERLAAAILFKVSHPGKVLPEILAASIYAMACILSYNGMTGISLLLEPVDSLTTMVSATEI
GHPDRGSYNGMDMNPINSLSSPMYHGQHQRYYTHHQRGGIHISKGSFMHGGGTMKRDHSK
RQRGNGS
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaacagctacaggagcttcaccatcatcttctgggtttgggaaaaagaggcaa
aagaaagggcaaagactacaagaagttacaaatgttgcagaatccactcggattcgggtc
gcccaagttcttgaacagttccgtgcttctaatgatgaagtgtatacatttgaatcaaac
ctttcaaatcgcgacagagctgcagttcatatgttatgccggaaaatgggtatgaaatcc
aaaagttctgggcgtggggatcaacgtcgtatatctattttcaagactaaaaatacagtg
gagacactggaaggaaaggatgcactaagtttttttaaattttcgggagaggcaaaagac
gttctacaggatttatttacaaaatatccacctgataatggggagacaagtgaacaagta
gttgggaaacacagtaagaaagttgataaatatcgaggaaagaaggatgatgtgttctgt
aaacctgcaatgaacaagtcagaaattgcaaaaagggcggagtcacttgcttcaagaata
gaaaataccccaaacctgagacagattacagtacagaggtctaagcttccaattgcttcc
ttcaaggatgtcattacatctacagttgaatctaatcaggtggtcttgatctctggtgaa
actggatgcgggaaaactacgcaggtcccccaatttattttggatcatatgtggggtaaa
ggtgagacatgtaaaattgtatgtactcagccccgacgaatttctgccacatcagtttct
gagagaatctctgctgaaagaggcgaaagtgttggcgacactgttggttacaagatacgg
ctggaaagcagaggtgggaaacactcatcaattgtgttttgtaccaatggggttctactg
agggtcctggttaccaaaggaagtgccagcttcaacaaaaaagctcccaggaaaatgggc
acggatgacatttctgatataacccacatcattgtggacgaagttcatgaaagggatcgc
tactccgatttcatgctcgcgattctcagggacttgcttccgtcatatccaaatttgcgt
ctggttctgatgagtgctacacttgatgctgaacacttttcaaaatactttggcggctgc
ccaattatccgagtccctggatttacttatcctgtaaaaactttttatcttgaggatgtt
ctttctattgtaaagtcaactgaaaataatcaccttgattccacctcaaccactgtcatg
tccgaggagtcaacattaactgaggagtacaaagtcgccttagatgaagcaattaatttg
gctttttcagatgatgatctcgatccccttttagatctaatatcttctgacgggggacca
aaagtgttcaattatcagcattctttgagtggagtgacaccattgatggtgtttgctgga
aaaggctgtattggtgacatttgcatgctcctctcttttggtgctgactgccatttaagt
gctaatgatggaaaaaatgctctagattgggctgaacgggagaatcagacagaagctgct
gaactaattaagaaacacatggagaaatcatcttccaattgcgaggagcagcagcattta
cttgacaaatacctatcaacagttgaccctgaactgattgatgatgtccttattgagcaa
ctagtaagaaaaatatgtatagactcagaggacggagcaatccttgttttcctccctggt
tgggaggatattaacagaacacgagagagattacgctcaagccagtacttcaaagatacg
tctaagttttcagtaatcgctctccattctatggttccatccgtggagcaaaagaaggtc
tttagacgccctccaccaggctgccgcaaaattgttctttcaactaatattgctgaaact
gccattaccattgatgatgttgtttatgtaatagacagtggacgaatgaaagaaaaaagt
tatgacccttataataatgtatcaacgcttcaatcttcatgggtctcaaaagctagtgca
aagcaaagagagggtcgtgctgggcgctgccagccaggaatttgttatcatctttattca
aaacttcgagcagcttcattgcccgatttccaggttcctgagattaagaggattcctata
gaggaactatgtcttcaggtcaagcttcttaaccctgattgcaagatagaagaattcctg
aagaagacacttgaccctccggtttatgagaccatacgtaatgcaatcattgttctgcaa
gatattggggcgttatcagttgatgagaaacttacagagcttggtgaaaggctaggatct
ttaccagttcatcctcttacaagcaagatgctcttaattgccatattattgaactgcctt
gacccagcattgacgttggcctgtgcttctgactatagagatccatttaccctacctatg
ttgccaaatgagaagaagagagcttcagctgcaagagccgagttagcctcatggtacggt
ggaagaagtgatcaattagcagttgtagctgcgtttgagggctggaaaagtgcgaaagaa
agtggtcaagagtcgaggttttgttctacgtactttgtatcctcaagcactatgaacatg
ttatcaggaatgcgtaaacaactgcaatctgaactcttgaggaatgggtttattccagga
gatggatcttcctgtagccttaacgcacaggatccaggcatattacatgctgttcttgtt
gctggtttgtaccctatggttgggagactgcttccgcctctgaaaggtggtaagagggct
gtcatagagactgcaggtggcgataaagttcgattgcaccctcattctactaactttaag
ctttcattcaaaaaattctgtgatcgaccattaattgtatatgatgagataacacgtggt
gatggaggtcttcatataaggaactgtagtgttattgggccactcccagttttgttgctg
gcaacagagattgttgtggctcctggaattgaagaagatgatgatgatgacgacgacaat
gatgatgatgaaagtgattacgaagatgctgatgaggacgatggtgaggaagataatatt
aaagcggatcaagggcagaaagttatgtcttctcctgaaaatacagttaaggtcattgtt
gataggtggattcctttcgagtcaacagctcttgatgttgctcaaatttactgcctgaga
gagcgattagctgcagcaattttattcaaggtctcacatcctggaaaagttcttcctgag
attcttgcagcctctatatatgcaatggcttgcatcctctcgtacaatgggatgacaggt
atctcattgctgctggagcctgtggactcgcttactacaatggtcagtgctactgagatt
ggtcatcctgatcgtgggagttataatggaatggatatgaatcccataaattctctcagt
tcacctatgtaccacggccagcatcagcgctactatacgcatcatcaaagaggcggcatt
catatatcaaagggatcgttcatgcatggaggaggaaccatgaaaagagatcattctaaa
cggcagcgtggaaatggatcttga
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