Nicotiana tomentosiformis: 104093681
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Entry
104093681 CDS
T05025
Name
(RefSeq) uncharacterized protein isoform X1
KO
K06100
symplekin
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104093681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nto03021
]
104093681
03019 Messenger RNA biogenesis [BR:
nto03019
]
104093681
Transcription machinery [BR:
nto03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104093681
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
104093681
U7-dependent histone pre-mRNA processing factors
104093681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
104093681
NCBI-ProteinID:
XP_009597764
LinkDB
All DBs
Position
4:110166037..110196185
Genome browser
AA seq
1333 aa
AA seq
DB search
MAGGPIREQALPLLAAANNHGDLTVKLSSLKQLKDILLSAEPSQVAELFPYLIDLKSSPQ
SLVRKCLIEVIEAVGMKAKEHSLVLMPVLFACLKDTSSMVTKQSIISGMKIYCGVLEELS
YQFHRHGIVERWLDELWTWMVKFKDAVFGFLFEAGPIVTKLLALKFLETYILLFTPDTND
SEKYAAQDKHGRSFNISWVGGHHPVLDPAALTSDAKNTVGTLLDLLRSASSLPGLLTISV
INSLAVIARRRPIHYNHIFSPLLDFDPNFEMTKGGHAASIRYSLRTAFLGFLRCTHPAIL
ESRERLLKSLRAMNAGDAADQVLRQLDKMMRNNERASRDSRLNKDEQSSNHLPFLGDPTK
KRSTPLDNEDPSNNYDLTSKRVHYGPNNHIAPPVERNDSGKEYVNGVNPMVEQIIGMIGA
LLAEGERGATSLEVLISELPPDLLADIVITNMKHLPKNPPPLARLGSLSLSRTSDSSNLS
QVMAPIDSSLAPQAWVPGSQTPTSLSTATSTSLLEMSASTSLPSDSKRDPRRDPRRLDPR
RAAVAVEVSSTLVAEDNTSAMQSAMLQSEMDPSSSSNIDIAVPLVSNSECMPTVYPKMET
NSITAESSPTPGASLSAPKEEVHDNDLNEAIPDDKIDTAIHVPLSSPGKVEQELVPEVPS
EVGVTDEIYSPLLETDQFSPPISTAATPEDACAELPALPPFIELTREQQRNMGKLAVEQI
IDSFKKLKETDNKHTGMALLSRLVAQIDADADADVVVMMQRLIFSDNQHQKVHELAMHVL
YHLHYLMLSDSAENSSPAAALYEKFLFTVAKSLLDSLPANDKSFSRLLGEVPYLPESMMK
LLVDLCSENYLGQYGRDGDRVTQGLGAVWSLILGRPPNRQACLDIALKCAIHPQDDVRAK
AIRLVANKLYVLGDISDSIEQFAKNMFLSAVDQHITDTEYSRSGTSVQRTGETGNQEASV
SGSQISEPGLSENDSVKSAVSDSQFDSELSFAQAQRLISLYFALCTKKFSLLHLVFDNYA
HAPKAVKQAVHRHMPVLIRAIGSSCSALLHIISDPPQGCENLLTQVLHILSEGTTPPPDL
VAVVKRLYETKLKDATVLIPVLSSFSKSEVLPIFPRLVALPLDKFQIALARILQGSAHTG
PALTPAEVLVAIHDINPERDGLPLKKITDACSACFEQRTVFTQQVLAKALRQMVDQTPLP
LLFMRTVIQAIDAFPTLVDFVMEMLSKLVIRQVWRMPKLWVGFLKCVSQTQPHSFPVLLQ
LPPPQLDSALNRYANLRSPLAAFANQPNVKNSLPRSTLVQLGLLNESNLRQPHLSSSMHA
SETGSSVHGTTLT
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggccgggggaccaattcgtgagcaagctctaccgctactcgcagccgctaacaaccac
ggtgatttgacagtaaagttatcttcgttgaagcaactgaaagatatactgttatcagct
gagccatcacaggttgctgagcttttcccttatttaatagaccttaagtcatcgccccaa
agtctcgttcgcaaatgcctcatcgaggtaattgaggcggttgggatgaaagcaaaggaa
cattcattggtgttaatgcccgtgttattcgcatgtttaaaagatacgagttctatggtg
acaaagcaatcaattatatctggcatgaaaatctattgtggcgtgttggaggaattatca
tatcagtttcaccggcatggtatagttgagaggtggcttgatgagctctggacatggatg
gtcaagttcaaggatgctgtctttggctttctttttgaggcaggcccaattgttacaaaa
ctgctggcattgaagtttctcgaaacgtatattttacttttcacaccggatacaaatgat
tctgaaaaatatgcagcacaagataaacatggacggagttttaatatttcatgggtaggt
ggtcatcaccctgttcttgatccggctgcacttacatcagatgccaaaaatactgttggc
actctattggatttattgcgctcagctagttctctccctggtttactaaccatttctgta
attaatagtttggcagttatagcaaggaggcgacctatccattataaccacattttttca
ccattgcttgatttcgatccaaactttgagatgacaaagggtggacatgctgccagcatt
cggtattctctgagaactgcctttctaggatttctgaggtgtacacatcctgccattttg
gagtcgagagaaagattgttaaaatcattgcgagcaatgaatgctggtgatgctgctgat
caagttcttcggcaactcgataaaatgatgagaaataatgagcgagcctcacgtgattct
agattgaacaaggatgagcagtcatcaaaccacttgccctttttaggtgatccaacaaag
aagaggtcaaccccattagataatgaagatccatctaataactatgatttaacttcaaaa
agggttcactatggccctaacaatcacatagctccaccagttgagagaaatgattctgga
aaggaatatgtcaacggggtgaacccaatggttgaacaaataattggtatgattggtgct
ttacttgcagaaggagaaaggggtgccacatctcttgaagttctaatatctgagcttcct
cctgatttgttggctgatatagtcataactaatatgaagcacttgcctaaaaatccccct
cctttagcacgacttggaagcttgtcattatctcgaacaagtgattctagtaatctatcc
caggttatggcaccaatagattcctcattagccccacaggcttgggttcctggatcccag
acacccacctctttatcaactgccacaagcacttcattattagaaatgtctgcttccaca
agtctcccttcagattcgaaacgtgatcctaggagggatccacggcgccttgacccaagg
cgtgcagctgtggctgttgaagtatcatcaactctcgttgcagaagataatacaagtgct
atgcaatctgcaatgctgcaatctgaaatggatccttccagttcatctaatattgacatt
gcagtacccctggtgtcaaattctgaatgtatgccgactgtgtatcccaagatggaaact
aactctatcactgctgaaagttcaccgacaccaggagccagtctgtcagctcccaaggag
gaagttcatgataatgacctaaatgaagctattcctgatgacaagatagatactgcgata
catgttccactatcatctcctggcaaagtagaacaggaattggtgccagaagttccatct
gaagttggagtgacagatgaaatttactctccattgctagaaacagatcaattttctccc
cctatttcaactgctgcaacccctgaagatgcatgtgcggagttgcctgcgcttccgcct
ttcattgagctgacccgtgagcagcaaagaaatatgggaaaactagctgttgaacagatt
attgactcgttcaaaaaattaaaagagacagacaacaagcatacaggaatggcattgctt
tctcggttggttgcccagattgatgctgacgctgatgctgatgtagttgtgatgatgcaa
aggcttattttctcagacaaccagcaccagaaggtacatgagcttgcaatgcatgtactt
tatcatttgcactatctcatgttgtcggattcagctgaaaactcttcacctgctgctgcg
ctatatgagaagttcctcttcactgtggcaaaatcattgctagattctttaccagcaaac
gacaagtcatttagtaggctccttggtgaagttccatatttacctgaatctatgatgaaa
ctgctagttgatttatgctctgaaaattatcttgggcaatatggccgtgatggtgaccgt
gtaactcagggccttggtgcagtttggagtttaattttggggcgtccgcctaatcgtcaa
gcatgcctggatatagctttgaagtgtgcaattcaccctcaggacgatgtcagagcaaaa
gctattcgcctggtggcaaacaaactttatgtgcttggtgacatttcagatagcatcgag
cagtttgctaagaatatgttcttgtcagctgtagaccagcatattacagatacagaatat
tcccggtctggaacctcggttcagagaacaggagagacaggaaatcaagaagcctcagtt
agtggttctcagatttcagagcctggattgtctgaaaatgattctgttaagagtgcagta
tctgattctcaatttgattcagaattgtcatttgctcaagcgcagcgtcttatctcatta
tattttgctctatgcaccaagaaattcagtcttctccaccttgtatttgataactatgca
catgctcctaaggcagttaagcaggctgttcaccgtcatatgcctgttcttattagggct
ataggctcttcgtgttctgcactgcttcatataatatctgatccacctcaaggctgtgaa
aatcttttgacacaggtgcttcatattctctctgaagggacaactcctccgcccgaccta
gttgcagttgtcaagcggttatatgaaactaaactgaaggatgcaactgttcttattcca
gtgctctcctcattttctaagagtgaggttctacctattttcccaaggcttgttgctctc
ccactggataagtttcagatagccctggctcggatattacagggttctgcccatacaggt
ccagcactgaccccagcagaagtgctggttgcaatacatgacataaatcccgagagagat
ggccttccacttaaaaagataacagatgcttgctcagcttgttttgagcagcgtactgtt
ttcacgcaacaggtcctggcaaaagccttgagacagatggttgatcagactcctctccca
ctgctcttcatgaggacagtgattcaggccatcgacgcctttcctactctggttgatttt
gtgatggagatgctctccaaactcgtgattagacaggtatggaggatgccaaagctttgg
gtgggtttcttaaaatgtgtctcgcaaacacagccacattcctttcctgtactactacag
ttgccaccaccacagcttgatagtgccctaaacagatatgctaatctccgaagtccattg
gctgccttcgcaaatcagccaaatgttaaaaattcacttcctagatcaaccttggtacaa
cttggtcttttaaatgaatcaaatttgcggcaaccacatctctcatcttctatgcatgcc
tcagagacaggctcttctgtccatggaactacactaacgtga
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