Nicotiana tomentosiformis: 104093751
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Entry
104093751 CDS
T05025
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104093751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nto03041
]
104093751
Spliceosome [BR:
nto03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
104093751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EML
ANAPC4_WD40
WDR90_beta-prop_4th
NBCH_WD40
PRP4
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_Vps41
WD40_RFWD3
WD_LRWD1
Beta-prop_SCAP
eIF2A
Beta-prop_Nup120_160
Beta-prop_SPT8
WD40_like
Nbas_N
Motif
Other DBs
NCBI-GeneID:
104093751
NCBI-ProteinID:
XP_009597863
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All DBs
Position
4:1920214..1927149
Genome browser
AA seq
576 aa
AA seq
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MDAEDEIPASTEEPSTLVGDNSTMVNAIGAINLQPVPPVTPPVAPTVILPPVVPAIAPRP
AVPTPIPPPLAPLPGRPPILRPPVAQNGEVRASDSDSDEEMGSDRGTGGSAQEYEISEES
RLVRERQEKAVQELLMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRML
MARLDAEGQLEKLMKAHEDEEAAASAAPAEEEDIQYPFYTEGSKTLLDARVEIAKYSLVK
SALRLHRARRKRDDPDEDVDAEVDWALKQAGSLALDCSEIGDDRPLWGCSLSHDGKMLAT
CSLSGIAKLWSMPQVQKLSTLKGHTERATDVVFSPTSNYLATASADRTAKLWNSEGSLLR
TFEGHLDRVARIAFHPCGKYLGTASFDKTWRLWDVESGEELLLQEGHIRSVYGLSFHHDG
SLVASCGLDALVRVWDLRTGRSILALEGHVKPVLGVSFSPNGYHLASGGEDNTCRIWDLR
QRKSLYIIPAHSNLISQVKFEPQEGYFLVTASYDTTAKVWSSRDFKPVKTLSGHEAKVTS
LDVAGDGQHIVTVSHDRTIKLWSGKNIEKEEKMDTD
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggacgctgaggatgaaattcctgcttcaacggaagaaccttcgactctagttggtgat
aattcgactatggttaatgctataggagcgataaatcttcaaccagttccacctgtcact
ccaccggttgctccaacagttatccttcctccagttgtgcctgcaattgctccacggcct
gcagtccctacccctattcctcccccattagctccgttgcctggtcgtccacctatcctt
aggcctccagtagctcagaatggagaagtgcgagcgagcgattcagattctgatgaagaa
atgggatctgatcgtggtactgggggctcagctcaagaatatgagatatccgaggagagc
agacttgtcagagagaggcaggagaaagccgtgcaggagcttctgatgaagcgacgtgca
gctgcgctagctgttcctacaaatgatatggctgttcgggctcgccttcgaaggcttggt
gagcctataactctctttggagaaagggagatggaaagaagggaccgtctgcggatgctt
atggcaaggcttgatgcagaagggcagctggaaaagctgatgaaagcgcacgaggatgaa
gaagctgcagcttctgctgcaccagcagaggaggaggatattcagtaccccttctacact
gaaggatcaaaaacacttttagatgcaagggtagaaattgcaaaatattctttagttaag
tcagccttacgtctccaccgcgcaaggaggaaaagggacgatccagatgaagatgtggat
gcagaggttgattgggctttgaagcaagcagggagcctcgcccttgattgcagtgaaatt
ggagacgatcgacccctttggggatgctcgctttcacatgatggaaagatgcttgctacc
tgttctctgagtggaattgcaaagttatggagtatgcctcaagtgcaaaagctttccacc
ctaaagggtcacaccgaacgagctactgatgttgtgttctctccgacaagcaattattta
gctactgcatctgctgataggactgcaaagttatggaactcagaagggtctcttctcagg
acgtttgagggacatttggaccgtgtagctcggattgccttccatccttgtgggaagtac
ttgggcacagctagctttgacaaaacttggagattatgggatgtagaaagtggtgaagag
ttgcttttgcaagaaggtcacattaggagtgtgtatggattgtcgtttcaccatgatggt
tcattggtggcatcatgtgggctggatgcacttgttcgagtgtgggatttaaggactgga
cgaagtattcttgctctggaaggtcatgttaaaccggttctcggtgtcagcttttctccc
aatggttatcatttggcaagtggtggtgaagataatacctgccgtatttgggacttaagg
cagagaaaatctttgtacatcatacctgctcactccaatcttatttctcaagttaaattt
gaacctcaggagggatactttttggttacagcgtcctacgatacgacggctaaggtatgg
tcatcaagggatttcaaaccggtgaagacactatctggtcatgaagcaaaagtcacgtca
ttggatgtagcgggagatgggcaacatattgtcactgtatctcatgatcgaacaatcaag
ctatggtcaggcaaaaacattgagaaggaagagaaaatggataccgactag
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