Nicotiana tomentosiformis: 104093754
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Entry
104093754 CDS
T05025
Name
(RefSeq) dicer-like protein 4 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
nto
Nicotiana tomentosiformis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nto03036
]
104093754
Chromosome and associated proteins [BR:
nto03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104093754
microRNA pathway
RISC loading complex
104093754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
DND1_DSRM
dsrm
ResIII
PAZ
Cas3-like_C_2
DUF6612
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
104093754
NCBI-ProteinID:
XP_070044107
LinkDB
All DBs
Position
11:complement(12690443..12745991)
Genome browser
AA seq
1624 aa
AA seq
DB search
MEGGDFENDTESPRSAATSPITEQLSALSLNGDTDSPVSVQKPEKDPRKIARKYQMDLCK
KALEENVVVYLGTGCGKTHIAVLLIYEMGQLIRKPQKSICVFLAPTVALVQQQAKVIEDS
VDFKVGTYCGKSKHLKSHEDWEKEMEQYEVLVMTPQILLHNLSHCYIRIEFIALLIFDEC
HYAQVESDHPYAEIMKIFYKPDVVKLPRIFGMTASPISGKGATVEGLETLLRSKVYSVED
KDELEQFVASPKVNVYYYGPGTACLTKAYFQKLEEIKSQCVMVLHKKAADHSTLRNTKKM
LKRLHGHLIFSLENLGVFGALQASCILLKGDHYERHQMVEADVNASDDSLCDRYLSQVAA
VFTSGCANDGMNPDLAIVEVLKEPYFSKKLLRLIGILSNFGVQPDMKCIIFVNRIVTARS
LSYMLQHLKVLSSWKCGFLVGVHSGLKSMSRKNTDIILNKFRSGELNLLVATKVGEEGLD
IQTCCLVIRFDLPETVASFIQSRGRARMPKSEYAFLVDSDNQRELNLIEHFSRNEARMND
EISSRKSCTTVIDFQENIYKVDMTGATISSASSISLLHHYCSKLPRDEFFCPKPQFFYFD
DIDGTICKLVLPSNAPMHQIVSAPQSSIEAAKKDACLRACKSLHELGALTDYLLPDQADE
DEDLIHGFSDSESSDGEDAREELHEMIVPAAFKEPWTETESPVCLNSYYINFSPCPIDRV
YKKFGLFLKAPLPQEAERMKLDLNLARGRSVETELIPSGATNFENNEVQLAEKFQRMFLK
IILDRSEFISEFVSLEKQDSVDSASKFYLLLPVNLCGHNKISIDWELVRRCLSSPIFGTS
VYAGNSEISKSDEQLQLANGSKSVHDVANSLVYVPCKDTFFFISDVVKESNAYSIYKDSK
NHVKHYYDTFGIHLSYPEQPLIKAKQLFCLDNLLRKKGYSELRDKEEHFVELPAEICQLM
IIGFSKDIGSSLSLLPSIMHRLESLLVAIELKGWLSASFPEGREVTIDHVLEALTTEKCN
EPFSLERLEVLGDAFLKFAVGRHVFLTYDAFDEGQLTRRRSNIVNNSYLYTIAVRNNLQA
FIRDQSFDPNHFYVVGRPCPVICNKQTEKSIHGQCGSVTDGAKTEVRCSKCHQWLRKKTI
ADIVEALVGAFVVDSGFKAAIAFLKCIGIYTDFEESQVKSICAASKVFMPLADEIDIPAI
ENLLGYPFVHKGLLIQAFIHPSYNNHGGGCYQRLEFLGDAVLDYLITSYLYSVYPDLKPG
QLTDLRSVSVNNNTFAVVAVHQSFHSRILCDSSDLRESITRYVNFIGRPDSMKRLAEEPS
CPKALGDLVESCMGAILLDTGFDLNRAWHIMLSFLKPVMSFTRLQLNPKRELHELCQFHG
WHLKFLVSKKDSKYLVEANVSGKNVSEAASAPNINKKAAKRMAAQQVLSSLTAQGYRRKS
KSLEQVVKTAKKMEAKLIGYDETPCVLTARCNDVEKNEASESDRDLIVFPISEELARNCN
FKLKPARKLAPEAAVQCNSEQTIVPNGSNSDSKATGGAINGSAKSILHEVCAANCWKPPR
FECCKETGPSHLKEFTFRVVVEIEETSRVIESCGAPRAKKKDAAEDAAEGALWFLKQEGY
MFNN
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcggcgattttgagaacgacactgagagtccacgaagtgctgcaacttcaccg
atcactgagcagctttctgctctgtctctcaatggcgacacagattcccctgtttcagtt
cagaaaccagagaaagaccccagaaaaattgctagaaagtatcagatggatctttgtaaa
aaagcattagaggagaatgttgttgtatatctgggaacgggctgtgggaaaactcatatt
gccgtcttgcttatctatgagatgggacagctgataaggaaaccccagaagagcatttgc
gtgtttcttgctcccactgtggcgttggtgcaacagcaagccaaggtcatagaagactct
gtcgacttcaaagttgggacatactgcgggaaatccaagcatttgaagagccacgaagac
tgggaaaaagaaatggaacagtatgaggtccttgttatgacccctcaaatactattacat
aatctttcccactgctatatcaggattgaatttattgctcttctgatctttgatgagtgc
cactatgcacaagttgagagtgatcatccttatgctgagattatgaagatattttacaaa
cctgatgtagtaaaactgccccgtatatttggcatgactgcatctccaatatcaggaaaa
ggtgctactgttgaaggccttgagaccttacttcgctctaaggtgtattctgttgaagac
aaggatgaactggaacagtttgttgcatcacctaaggtgaatgtatactactatggtcct
ggcaccgcgtgcctaactaaagcttactttcagaagcttgaagagattaaaagccagtgt
gtgatggtgcttcacaagaaagcagctgatcatagcactctcaggaacacaaaaaagatg
ctcaagagactgcatggacatctaattttttctctggaaaacctaggtgtctttggggca
ttacaggctagttgcatcctcttaaagggggatcactatgagcgccatcaaatggtggaa
gctgatgttaatgctagtgatgactctttgtgtgacagatatctgagtcaggtcgctgca
gtgtttacttctggttgtgctaatgatggtatgaatcctgatttggcaattgtggaagtt
ctgaaggagccttatttctccaaaaagcttttacgtctaattggaatcctttccaacttc
ggggtacaaccagatatgaagtgcataatttttgtcaataggatcgtgactgcgagatct
ctttcatatatgcttcagcatctgaaagttttatcttcttggaagtgtgggtttcttgta
ggagtgcactcgggattgaagagtatgtcacgaaaaaatacagatatcattctcaataag
ttccgttctggtgagctcaacttattggttgccaccaaagttggcgaggaaggacttgat
atccagacatgctgcctcgttatacgatttgatcttcctgaaactgttgccagttttata
cagtctagagggcgtgcccgcatgccaaagtctgaatatgcatttttggttgatagtgat
aaccaaagggagcttaatttgatcgagcatttttcaagaaatgaagctcggatgaatgat
gagatttcttccaggaaatcttgcacgacagttatagattttcaggaaaatatatacaaa
gtagatatgactggtgcaaccatcagttctgcatcaagcatttcgttgcttcaccattat
tgttccaagcttccacgtgacgagtttttctgccccaagccgcagttcttctactttgat
gacatagatggaactatttgcaaattagttttaccttcaaatgctccaatgcatcaaatc
gtgagtgctcctcaatcttctatagaagcagctaagaaagatgcctgtttaagagcctgc
aagagcttgcatgaacttggagcactcactgactatcttttgccggatcaagcagatgaa
gatgaagacctgattcatggtttttctgactcagaaagctcagatggcgaagatgcacga
gaagagctccatgagatgattgttcccgctgcctttaaagaaccatggactgagacagag
agtcctgtttgccttaactcgtactacattaacttttcaccttgtccaattgatagggtt
tataaaaagtttggcctatttctgaaagcacctcttccccaagaggctgagagaatgaaa
cttgatctcaacttggctcgaggtagatctgtagagacagagcttattccatcaggagct
actaattttgagaacaatgaggtacaactagcagagaaattccagagaatgttcctcaag
atcattcttgaccgctctgagttcatttcagaattcgtatctttggaaaaacaagattct
gttgactcagcttcaaaattttacctacttcttcccgtcaatttatgtggacacaataaa
atttccatagactgggagcttgtcagaagatgcttgtcatcaccaatttttgggacttca
gtatatgcaggcaatagtgagatatccaaatctgatgagcagttgcaacttgccaatggt
tccaaaagcgtacatgatgttgccaatagtttggtatatgttccatgcaaggatacattt
ttcttcatatctgatgttgtcaaagaaagcaatgcatacagcatatataaagattcaaaa
aaccatgtcaaacactattatgatacttttggtatccatctttcgtaccctgagcaacca
ctaataaaagcaaaacaactcttctgtttggacaacttactacgaaagaaaggctattca
gagttgcgtgataaagaggagcactttgttgaactacctgctgaaatttgccagctcatg
ataattggattttccaaagatattgggagctcattatcactgttgccatcgatcatgcat
cgtcttgaaagcttacttgtcgctattgaacttaagggctggctatctgcttctttccct
gagggaagggaagtaacaatagatcatgttcttgaagcacttactacagagaaatgcaat
gaacctttttctcttgaaaggcttgaagtgcttggtgatgcatttctcaagtttgcagtt
gggaggcatgtctttcttacatacgatgcctttgacgaaggacagttaactagaaggcgc
tcaaacattgtgaacaattcctatctgtacacgatagcagtcagaaacaatttacaggca
tttattcgtgatcaatcatttgatcccaaccacttttatgtagtaggccgtccgtgccct
gtaatctgtaacaaacaaacagaaaaaagcatacacggtcaatgtggtagtgtaaccgat
ggtgcaaagactgaagttaggtgtagcaaatgtcatcagtggttgcgtaagaaaacaatt
gctgatatagttgaagcccttgttggcgcttttgtagttgacagtggcttcaaagcagca
attgcatttcttaaatgtattggtatctatacagatttcgaagaatcacaagtaaagagt
atttgcgctgcaagcaaagtctttatgccacttgctgatgaaatagatattcctgccatt
gaaaatttattaggttatccattcgtccataagggtttgctcattcaggccttcatccat
ccatcatataacaaccacggaggaggttgctatcagagactggagtttctcggagatgct
gtcctcgattatttgatcacatcctatctatactctgtgtacccagatctgaagcctggg
cagttgactgatctgagatcagtttctgtaaacaacaacaccttcgcagttgttgcagta
catcaaagcttccacagccgtatactctgtgattctagtgacctccgtgagtcaattact
agatatgtcaatttcattggaagaccagattctatgaaaaggctggctgaagagccatct
tgtccaaaggcccttggcgacctggtggagtcttgtatgggtgcaatcctgcttgacaca
gggtttgacttgaaccgtgcttggcatataatgctctccttcttaaagcccgtcatgagc
tttaccaggttgcagcttaatccaaaaagagaactccatgaactttgccagtttcatggc
tggcatctaaagttcctggtttcaaaaaaagatagcaaatatctagttgaggccaatgtg
agtgggaagaatgtttctgaagcggcttctgctcccaatatcaataaaaaagctgccaaa
agaatggctgcccagcaagtactttcaagcttgacggctcaaggctataggcgcaagtct
aaatcgctggagcaagtggtaaaaacagctaaaaagatggaagctaaactgataggatat
gatgaaacaccctgtgttcttactgctaggtgcaatgacgtggagaagaacgaagcctct
gaaagtgatcgtgacttgatagtattccctattagtgaagaacttgcaagaaattgcaat
ttcaagttaaagcctgcgagaaagttggccccagaggcagctgtacaatgcaattctgag
cagaccatcgtgcctaatggttctaattcagattcaaaagctacaggtggtgcaataaat
ggatcggcaaagtcaattttgcatgaagtttgtgctgccaactgctggaaacctcctaga
tttgaatgttgcaaggagacagggccaagccacttgaaagagtttacttttcgggtggtg
gtggaaattgaagaaacctcgagagttatagagtcttgtggagctcctcgggcgaaaaag
aaagatgcagctgaggatgcagcggaaggggcactttggttcttgaagcaggaaggatat
atgttcaataactga
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