Nicotiana tomentosiformis: 104093925
Help
Entry
104093925 CDS
T05025
Name
(RefSeq) uncharacterized protein isoform X2
KO
K06100
symplekin
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104093925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nto03021
]
104093925
03019 Messenger RNA biogenesis [BR:
nto03019
]
104093925
Transcription machinery [BR:
nto03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104093925
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
104093925
U7-dependent histone pre-mRNA processing factors
104093925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
104093925
NCBI-ProteinID:
XP_009598060
LinkDB
All DBs
Position
7:complement(101037830..101062010)
Genome browser
AA seq
1328 aa
AA seq
DB search
MVGMMSPISRERIASLLSAAKFASDVPSKLHSLRRLNNELAGADSQLLSEFLPSLLDLVS
DRFSPVRKLTAEMVGYIGFKHGEFIPDIVPVLISALKDDMPAVARQAITCGIDIFRCTLV
KVAIQGLFSSELDDSLESAWAWVLKFREEIYAMAFQPASDGRRLLALKFVESVVLLYTPN
PSVSSEPPPALDIEGKFEQFNVSWLRGGHPILNVGDLSVEASQSLGLLLDQLRFPAVKSI
TNLMIIVLINCLSAIATKRPAFYGRILPVLLSLNPSSSDGNAKHVSGVYHALKNAFVSCL
NCTHPGAAPWRDRLEGALREKRAGVQAEPVVSHDSQNNGHIELKDVSSIPEESKPSVKAS
DSGQSIAGTKRSGVEDNAELVDDNLSKKRMRSAPIVLKEPKQELSANQERVSTGGSTTTR
PDGDNVHLQPLVAMFGTLVAQGEKAAASLDILISSISADLLADVVMANMRNLPSNQPKVD
DDEEPPLKPEIESDFKQLSSLLSDVVSQSSMLAEKDEKDAQNLVFIEPELQQIKEGDEHL
DSVTTNVTSDALNYASEQAPEYVTEPLSSKSTPLLMENDVSPMQSDVADIENNEDFIPGL
DSVVRKDVSSELVVVSSVDPTELEDGSQEQGSSLVRSSLEVVPSISTDRSEELSPKAAVT
DVTSVNSSTAASVGLSPQLLLPKISAPVIHLPDEQKDNIQKSAFTRVIDAYKQVTVAGGS
QTRFSLLAYLGVEFSSELNPWKFLQTHILSDYMNHEGHELTLRVLYRLYGRAEEDQDFIS
STAAASVYETFLLTVAETLRDSFPASDKSLSRLLGEAPHLPNSVLKLLERLCCPGSSEKD
EKELHSGDRVTQGLSTVWNLILMRPPMREACLRIALQSAVHHLEEVRMKAIRLVANKLYP
LTSISQQIEHFANEMLMSVSTVDHKADSNGDGSNPALQKDSASEKPTEEGPSFSITTKDV
SSDTLQSSTAGSISPFSIAEGQRCMSLYFALCTKKHSLFGQIFVVYSRASEAVQQAIHQQ
IHMLVRTIGSSSELLEIISDPPSGSEKLLMQVLQTLTEGTVPSLQLITTIRKLYETKVKD
VELLIMILPFLSKDEVLLLFPHVVNVPLDKFQGALSRILQGSAHSGPVLTPAEALIAIHR
IDPEREGIPLKKVTDACNACFEQRQTFTHQVLAKVLNQLVEQIPLPLLFMRTVIQAIGAF
PSLVDFIMEILSRLVSKQIWKYPKLWVGFVKCALLTKPQSFGVLLQLPPAQLENALSRTP
GLRAPLVAHANQPHIKSSLPRSVLTVLGIESDAQGSSQAPPNQSQTGDMGNSDKEALTEK
SRESSIAS
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atggtgggaatgatgtctccgatttcacgagaaaggatagcgagtttactcagcgctgcc
aagtttgcttccgatgttccgtcgaagcttcacagcttgcgccggttaaataatgaactc
gccggcgccgactctcagttgctctctgaattcctcccttctctccttgacctcgtatct
gatcggtttagccctgttcgtaaattaaccgctgagatggttggttatattggattcaaa
catggagaattcatacctgatattgtacccgtgttgatctctgccttgaaggatgatatg
ccagctgttgctcgacaagcaatcacttgtggaattgatatatttcggtgtactctagtc
aaagttgcaatccagggcttgttttcaagtgaattggatgattctcttgaatcagcatgg
gcctgggtgctgaagtttagggaggagatatatgcaatggcatttcagcctgcaagtgat
ggaagaagattgcttgcgctgaagtttgtggaatctgttgtgctactttacactccgaat
cccagtgtcagttcggagccaccgcctgctttggacattgaagggaagtttgaacaattc
aatgtttcgtggcttcgtggaggtcatccaatactaaatgttggggatttgtctgttgaa
gcaagtcaaagtttgggtctattgcttgatcagcttagatttcctgcagtgaagtcaatt
actaacttgatgatcattgtgctcattaactgtctttcagcaattgcgactaaaaggccg
gctttttatggtcgtattctgccagttctacttagcctgaatccttcaagctccgacggc
aatgcgaagcatgtttctggggtataccatgctttgaagaatgcctttgtttcttgcttg
aattgtacacacccaggagctgcaccgtggcgggacagactagaaggtgcactcagagaa
aagagagcaggagttcaggcagaaccagttgtaagccacgattcccagaataatggacac
atagagttgaaggatgtttcatcaatcccagaggagtcaaagccttcagttaaagcatcg
gatagtggacaaagcattgctggaacgaaaagatcaggggtggaggacaatgctgaactg
gtagatgataatctctctaagaagcgcatgcggtcggcacctattgtcttaaaggaacca
aagcaagagctaagtgcgaaccaggagagagtttcaactggaggttctacaacaaccaga
ccagatggagataatgttcatttgcaaccacttgttgcaatgtttggtacattagttgcc
cagggtgaaaaggctgcagcatcattagatattttaatctctagcatatcagctgactta
ctagctgatgttgtgatggctaatatgagaaatctaccttcgaatcagccaaaagttgat
gatgatgaagagccacctctgaagccagaaattgaatctgattttaaacaattatcatca
ctgttgtcagacgtcgtttctcagtccagtatgttagcagaaaaagacgagaaagatgct
caaaatttggtcttcatcgagccggagttgcagcaaattaaagaaggagacgagcacctt
gattctgtcactactaatgttacatctgatgccctgaattatgcaagcgaacaagcaccg
gaatatgtaactgagcctctttcttcaaaaagtacccctctgctaatggagaatgatgtc
tcaccaatgcaatctgatgttgctgacattgaaaacaatgaggatttcatacctggtcta
gattctgtagttcgcaaagatgtttcatcagagctcgtagttgtttcatcagttgatccc
actgaacttgaggatgggagccaagagcaagggtctagtttagtgaggtcatctttggag
gtagttccatcgatttcaactgataggtctgaggagcttagtccaaaagcagcagtaaca
gatgtaaccagcgtaaactcatcaacggcagcttctgttgggctttctccgcagttgctt
ctacccaaaatatctgctccagtcatccacctacctgacgagcagaaggataatatacaa
aagtcagctttcactcgtgtcattgatgcttataagcaagttacagttgctggaggttct
caaacccgcttttctcttcttgcctatttaggtgttgagttttcttcggagctaaaccct
tggaaatttctacaaacacatatattgtcagattatatgaatcatgaggggcacgagttg
acattgcgtgtcctctacaggttgtatgggcgtgcagaagaagaccaggatttcatttct
tcaacagctgctgcatctgtatatgaaacatttctacttacagtggcagaaacacttaga
gattcttttccagcttctgacaaatctctaagtagattgcttggtgaagctcctcactta
ccaaattctgttctcaagttgttagagaggttatgttgtcctggtagttctgaaaaggat
gagaaggagttacatagtggagatcgagtcactcaaggcctcagtactgtgtggaacctg
attctgatgagacctccaatgagagaggcctgtctcagaattgctttacagagtgctgtt
catcacttggaggaggtgcgcatgaaggcaatacggctggtcgccaataagctttatcct
ctgacatccatctctcaacaaatagagcactttgccaatgaaatgttgatgtcagtttca
accgttgatcataaagcagattcaaatggtgatggatctaatcctgccttgcagaaggat
tctgcttcagaaaaacccacggaagaaggaccatcattttccatcaccaccaaagatgtg
tcctctgacactcttcagtcatccactgctggaagcatatcaccgttttcgatagctgaa
ggccagcggtgcatgtcgctctattttgcactgtgtactaagaagcactcactttttggc
caaatatttgttgtatatagccgtgcatccgaggctgtacagcaggcaatacatcaacaa
atccatatgctagttcggacaattggttcttcatctgagctacttgagatcatatcagat
ccaccaagtggaagtgaaaagctattgatgcaggttttgcaaacgttgaccgaggggaca
gttccttccttacagttgataactactatcaggaagctatatgagactaaagtaaaggat
gttgaacttcttattatgatacttcctttcttgtcaaaagacgaggttttgctgcttttc
ccacatgttgtgaatgttccattggataaattccaaggtgctctgtctcgtattctacag
ggatcagctcactcaggtccagtgctaactcctgctgaagcattaattgctatccatagg
attgatcctgaaagagaaggcattccattgaagaaggtcacagatgcatgcaatgcttgt
tttgagcagagacagacattcacgcatcaggttcttgcaaaggtcttgaaccaattggtc
gaacaaattcctcttccgttgctgttcatgcggactgtaatacaagctattggtgctttt
ccatctctggtggatttcataatggagatcctctctcgtcttgttagtaaacagatatgg
aaatacccgaagctgtgggtaggatttgtgaaatgtgcccttttgaccaagccacaatct
ttcggagtgctgcttcagctacctccagctcagcttgaaaatgcattgagtagaacgcct
ggtctcagagctcctttagttgcacatgcaaaccaaccacacataaaatcttcacttcca
aggtctgtcttaacggttcttggaattgaatcggatgctcaaggttcaagtcaggcacct
cccaaccagtctcagacaggtgatatgggcaattctgataaggaggcactcactgagaaa
tccagggaatcgtcaattgccagttaa
DBGET
integrated database retrieval system
