Nicotiana tomentosiformis: 104094760
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Entry
104094760 CDS
T05025
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104094760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nto03021
]
104094760
03019 Messenger RNA biogenesis [BR:
nto03019
]
104094760
Transcription machinery [BR:
nto03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104094760
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104094760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf-CCCH_2
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
104094760
NCBI-ProteinID:
XP_009599048
LinkDB
All DBs
Position
2:complement(58759052..58767136)
Genome browser
AA seq
670 aa
AA seq
DB search
MDDGEGGLSFDFEGALDTLPTHPTASVPVIQSSDHYNTITTAGPDPSASTASVPTVGLGQ
GQLGDGSFVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREP
DCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQNLTSYNYGYS
NRFLQNRNANYSTQADKSPTQQVQNVMNQAVKSTAVEPPIGPQHQAHQQQVQQPQHHSAP
TQTQTLPNGQQNQADRTAIPLPQGTSRYFIVKSCNPENLELSVQQGVWATQRSNEAKLNE
AFDSVENVILVFSINRTRHFQGLAKMTSRIGGASKGGNWKHEHGTAHFGRNFSVKWLKLC
ELSFQKTRHLRNPYNENLPVKISRDCQELEISVGEQLASLLYLEPDSELMAISLAAESKR
EEERAKGVNPDNGNENPDIVPFEDNEEEEEEESEEEDESFGQAFGPAAFDRGSGRGIVWP
PIVPFGRGARPYPGMRGFPPRMMSDGFSYGSMTPDGFPMSDLFGMGGRPFGPFGPRFPGD
MMFHNRPPAAGGFGMMMGPGTAPFMGGMGPGATGPPRGGRPMGMHPSFIPPPSQPSQNPR
VKRDPKDPLNERIDRFSSGSDQRRGQEMAGSVGGPDEGVSYPQTGNSFRNDESESEDEAP
RRSRHGDGKK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggatgatggagaaggaggattaagctttgacttcgaaggcgcgctagacacattgcct
acacacccaactgcatcagtaccagtaatacaatcctcagaccattacaacaccatcacc
actgcgggacccgacccgagtgcttctactgcctcagtccctacagtcggactagggcaa
gggcaattaggcgatggttcatttgttgggaatcgtagaagcttcaggcagactgtttgc
cggcattggctgcggtcgctgtgtatgaaaggtgatgcctgtggtttcctccaccaatat
gataagtctcgaatgcctatttgcaggttttttcgactctacggagagtgtcgtgagccg
gattgtgtttataagcacaccaatgaggatattaaagagtgtaacatgtataaattggga
ttttgcccgaatggtcctgattgccggtatagacatgcaaagctgcctggacctccacct
ccagtggaagaagttcttcagaaaattcagaatttgacatcctacaactatggttactca
aaccggtttttacagaaccgcaatgctaattattcaactcaggcagacaaatctcctact
cagcaagtacagaatgtaatgaatcaagcagtgaaatctacagctgtagagccacccatt
ggaccgcagcaccaggcacatcaacagcaagttcaacagcctcaacatcacagtgcccca
actcaaacacaaactcttcctaatggccagcaaaatcaggcggatagaactgcaataccc
ctgcctcaaggaacatctaggtactttatagttaaaagctgcaaccctgagaatcttgaa
ttgtcagtacaacaaggagtttgggcaactcaacgaagcaatgaagctaaactaaatgaa
gctttcgattctgtggaaaatgtcattctagttttttcgatcaaccggactagacatttt
cagggtcttgcaaaaatgacatctagaattggtggtgcttctaaaggaggaaactggaag
catgaacatggaactgcacattttggacggaatttttcagtaaaatggttaaagctctgt
gaactgtccttccagaaaactcgccatttgaggaatccatataatgaaaacttacctgtg
aagataagcagagattgtcaagaattagagatctctgttggagagcagttagcttcttta
ctctatctagaaccagacagtgaacttatggcaatctcacttgcagcagaatccaagcga
gaggaggaaagagcaaagggagtaaaccctgacaatgggaatgagaacccagatattgta
ccttttgaagacaatgaagaagaggaagaggaagaaagtgaggaggaggatgagagcttt
ggtcaagcttttggaccagctgcttttgacagaggaagtggtaggggaattgtatggcct
cctatagttccttttggacgtggagccaggccttatcctgggatgcggggcttccctcca
cgcatgatgagtgatgggttttcttatggatcaatgacacctgatggttttcctatgtcg
gatctttttggaatgggcggccgaccttttggaccatttggccctcgattcccaggtgat
atgatgtttcacaaccgtcctccagctgccggtggatttgggatgatgatgggtccagga
acggcccctttcatgggtggaatgggtcctggagcaactggcccacccagaggtggtcgg
ccaatgggaatgcatccatcatttattccacccccatcacaaccttctcaaaatcctagg
gtcaaaagggatccgaaagatccacttaatgaaaggattgatagattcagttcaggttca
gatcaacgtaggggtcaagagatggcaggctcagttggtggaccagatgaaggagtaagt
tatccacaaactggaaacagctttagaaatgatgaaagcgaaagcgaggatgaagcacct
agaaggtccagacatggggatggaaagaaatag
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