Nicotiana tomentosiformis: 104095073
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Entry
104095073 CDS
T05025
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52B-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
nto
Nicotiana tomentosiformis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104095073
03041 Spliceosome [BR:
nto03041
]
104095073
03036 Chromosome and associated proteins [BR:
nto03036
]
104095073
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104095073
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104095073
mRNA cycle factors
Common to processing body (P body) and stress granule
104095073
Spliceosome [BR:
nto03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104095073
Chromosome and associated proteins [BR:
nto03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104095073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
104095073
NCBI-ProteinID:
XP_009599417
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All DBs
Position
10:35652207..35656376
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AA seq
551 aa
AA seq
DB search
MSMPWNGSYTESTRSSRSTRPTYLPPHLRNPSLPPSNVEQLNINAYDDVPVEVTGADIPE
PLSSFSEIGDLYDNIRRCNYVKPTPIQRYAIPVGMAGRDMMACAQTGSGKTAAFCLPIIS
GILKDKRTTSTSTRGRGGCAFPLALILSPTRELSCQIHEEAKKFSYLTGLKVVVVYGGAP
IIPQLGNLEKGVDILVATPGRLVDMIEKSRVSLQAVKYLALDEADRMLDMGFEPQVRKIV
QKMKMPPPGRRQTMLFSATFPTEIQRLASDFLSNYIFLAAGKVGSSTDLIVQKVEFVPDT
DKKDHLLNLLHAQHSNQMDAKLALTLIFVETKRGADTLERWLVRSGIPSIAIHGDKMQFE
RERALKSFKSGQTPVLVATDVAARGLDVPNVAHVINFDLPRNIDDYVHRIGRTGRAGKSG
LATAFFNDKNVPLAKDLVELMQGANQEIPNWLSEYAETCYSSDGARTSRYVGSKFGGYDY
RSVSFHSGSGNYSSQFADTEDATHYAVSASAFTYGAPFAAGCYGPSEMDSFPAASYRYSF
DYAPVTASGWD
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgagtatgccatggaatggttcttataccgagtcaactcgctccagtcgttctactcga
cccacttacctccctcctcacctgcggaacccatcgcttccaccttctaatgttgaacaa
ctgaatataaatgcatatgatgatgttccagtagaggttactggggctgatattccggag
ccactctcgtccttttcggaaattggtgacttgtatgataacataaggaggtgcaactat
gtgaagccaacgccgattcagcgatacgcaataccagtcggaatggcggggagagacatg
atggcttgtgctcagacgggttcagggaaaacggccgcgttttgccttcccattatcagt
gggattttgaaggacaaaagaactactagtactagtacaaggggaagggggggttgcgct
tttcctcttgctctcatactctctcctactagagagttgtcttgtcagatacatgaagag
gcgaagaagttctcttacttgacaggattgaaggttgtggttgtatatggaggagcaccc
ataattcctcagttaggcaatctggaaaagggtgttgacattttagttgccacacctggg
cgcttggtggacatgatagagaaatcaagagtttccttacaagcagtgaaatatttggcc
ttagatgaagctgatcggatgcttgacatgggctttgagccccaagttcgtaagattgtt
cagaaaatgaagatgcccccacctggtagaaggcagacaatgctttttagtgcaacattt
ccaactgagatacagaggcttgcatcggattttctttcaaactacatcttcttggcggct
ggaaaagttgggtccagcactgatctaatagttcaaaaagttgagtttgttcctgatacg
gacaagaaggatcatttactgaatcttcttcatgctcaacattcaaatcaaatggatgca
aagctggctttgactctaatatttgtggagaccaaaagaggagcagatacattagaacgt
tggttggtcaggagtggtatcccgtctattgccattcatggtgataaaatgcagtttgag
agagaacgagcgctaaaatcatttaaaagtggacaaactcctgttttagttgcaactgat
gtagctgctcgcggtctggatgttccaaatgttgctcatgtcataaattttgacttgcca
aggaacatagatgactatgtacacagaattggacgaacaggtcgtgctggtaaatctgga
ttggcaactgcatttttcaatgacaagaatgtacctttggcaaaggatcttgttgaattg
atgcagggggcaaatcaagaaattcctaattggctgagtgaatatgctgaaacatgttac
agcagtgatggtgctagaacgagtcgctatgttggaagtaagttcgggggctatgattac
aggagtgtttccttccatagtggtagtggaaactactctagccagtttgctgatacagaa
gatgctactcattatgctgtgtccgctagcgctttcacctacggtgctccttttgcagcg
ggttgttatggtccttctgaaatggactcctttcctgctgcttcataccgttacagtttt
gattatgcacctgttactgctagtggctgggattga
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