Nicotiana tomentosiformis: 104095283
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Entry
104095283 CDS
T05025
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104095283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104095283
03012 Translation factors [BR:
nto03012
]
104095283
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104095283
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104095283
Translation factors [BR:
nto03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104095283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
SR-25
nSTAND3
NACHT
AAA_19
T2SSE
Myosin_head
Motif
Other DBs
NCBI-GeneID:
104095283
NCBI-ProteinID:
XP_070037739
LinkDB
All DBs
Position
7:66867769..66886334
Genome browser
AA seq
1036 aa
AA seq
DB search
MSVRLLNPQSSALLHFHFRNSLSSSAPRSCVPSHFRLKSSAMSYRPNSRGGRRGSGSGAG
RGGAGRGGGGRGGGGRGGEQRWWDPVWRAERLRQQAAEMEVMNENEWWGKMEQFKRGGEQ
EMVIRRNFSRDDQQKLADMAYQLELYFHAYNKGKALVASKVPLPSYRADLDERHGSTQKE
IRMSTEIEERVGNLLSSSQDTVSGGTSSSTSGSSAKLSSKALETARPKLTVENDTAKQRL
NNELKQKQEKTRESEKVKAMISFREELPAFKVKYEFLEAVASNQVLVVSGETGCGKTTQL
PQFILEEEISSLRGADCNIICTQPRRISAISVAARICSERGENLADTVGYQIRLESKRSA
QTRLLFCTTGVLLRQLVQDPDLTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLI
LMSATINAELFSKYFRNAPKIHISGLTYPVAELFLEDVLEKTRYLIKSEADSFQGSSRRR
QRQQDSKRDPLTDLFEDVDIGSHFKGYNTTTRQSLEAWSGSLLDLGLVEATIEYICRREG
EGAILVFLTGWDDISKLLDKIKANNFLGDTRKFLILPLHGSMPTINQREIFDRPSASMRK
IVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV
QPGVCYRLYPKLIHDAMPQYQLPEILRTPLQELCLQIKSLQFGAIESFLAKALQPPDPLS
VHNAIELLKTIGALDDTEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALTIAAALA
HRDPFVLPINRKEEADAAKRSFAGDSCSDHIALLKAFEGWKDAKHYRKERAFCWENFLSP
VTLQMLEDMRNQFVDLLSDIGFVDKSRGAKAYNEYSNDLEMVCAILCAGLYPNVVQCKRR
GKRTAFYTKEVGKVDIHPASVNAGVHLFPLPYLVYSEKVKTTSIYIRDSTNMSDYALLMF
GGNLSPSKSGEGIEMLGGYLHFSASKSVLDLIKKLRGELDKILKRKIEEPGFDISVEGKG
VVGAVVELLHSQDIRY
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgcgccttctgaacccccagtcctccgcccttctccattttcacttccgcaac
tccctttcttcatcagccccaaggagttgcgttccgtcacattttaggttaaaatcatct
gctatgtcttatcgtccgaacagccgaggcggccgtcgtggcagcggcagcggcgcaggc
cgcggtggcgcaggccgcggtggcggtggtcgtggaggaggaggacgcggtggtgaacag
agatggtgggatcctgtctggcgtgccgaacgccttcggcaacaagccgctgagatggag
gtgatgaatgaaaatgagtggtgggggaagatggagcagtttaagagaggaggcgagcag
gaaatggtaataaggcggaattttagtagggatgaccagcaaaagttggctgatatggcg
tatcaattagagctttacttccatgcttataacaaaggaaaggcacttgttgcaagcaaa
gtcccattgccaagctatcgtgctgatcttgacgagcgtcatggatctactcagaaagag
ataaggatgtctacggagattgaggaaagagtcggaaatctattgagtagttcacaagat
actgtatctggtgggacttcctcttcaacatctggtagttctgccaaattatcatccaaa
gctctagaaacggccagacctaagttgactgtagagaatgatactgccaagcagagactt
aataatgaacttaaacagaaacaggaaaagacaagggaaagtgaaaaagtcaaggcaatg
atctcattcagggaagaacttccagcatttaaagtaaaatatgaatttttggaagctgtt
gcaagtaatcaggttttggtagtttctggagaaactggttgtggcaagaccactcagctc
cctcaattcattctagaagaggagatatcatccctccgtggtgctgactgtaacattata
tgcactcagcctcgccgtatatctgccatatcagttgcagctagaatatgctctgaaaga
ggagagaatcttgctgatactgttggttaccagatccgactggagtcaaagcgctctgct
caaacgcggttgctattttgcacaacaggagtgttattgcggcagctggttcaggaccct
gatttgactggtgttagccatctgcttgttgatgaaatccatgaaagaggcatgaatgaa
gactttctcttaataattttacgtgacctccttcctcgacggcctgatttgcgtctcatt
ctgatgagtgctactattaacgctgagttgttctccaaatacttcagaaatgcacccaaa
attcatatatcgggcttgacatatccagtggcagagctgtttcttgaagacgtgttagag
aagactcgttaccttataaaatccgaagcagacagtttccagggaagctcaaggagaagg
cagaggcaacaagattctaaaagagatcctctgactgatcttttcgaggatgtggacatt
ggttcccattttaaaggctacaacacgactacaagacaatctcttgaagcatggtctggt
tcgctgcttgatttgggtcttgtggaagcaacgattgagtatatttgtcgtcgtgaaggt
gaaggtgcaattcttgtattcctgactggttgggatgacatttctaagctgcttgataaa
attaaggctaacaacttccttggagacaccaggaagtttttgatcctccctcttcatggt
tcaatgccaacaataaatcaacgagaaatatttgatcgcccatctgctagcatgaggaaa
attgtgcttgcaaccaacatagctgagagcagtataactatagatgatgtcgtgtacgtc
atagactgtggaaaggcgaaagagactagttatgatgctcttaacaagctagcttgttta
ttaccatcatggatttcaaaggcctcggcacatcagagacgtggtcgtgcaggccgtgtg
caacctggagtttgttataggttgtatccgaaactaatacatgatgcaatgcctcaatat
caactacctgagattcttcgaacaccattacaggagctttgtctccaaattaagagcttg
cagtttggcgctattgaatcctttctggccaaggcacttcaacctccagatcctctctct
gtccacaatgccattgaacttctcaaaactattggagcgctggatgatacagaagagctt
actcctcttggtcgccatctttgcactctacctctggacccaaatattggaaagatgctt
ctgatggggtccatcttccaatgtctaaaccctgcactgactattgctgctgctcttgca
caccgtgatccttttgtccttccaataaacaggaaagaggaagcagatgctgccaaaaga
tcatttgctggtgattcttgcagtgaccatattgcacttcttaaagcatttgaaggatgg
aaagatgctaaacattatagaaaagaaagagcattctgttgggaaaactttttgtctcct
gtaacgttgcagatgttggaagacatgagaaatcagtttgtagacctactgtcagatatc
ggttttgtggataaatcacgaggagctaaggcatacaatgagtatagcaatgatttagag
atggtatgcgctatcctttgtgcgggtctctacccaaatgttgtgcagtgtaaaagaaga
ggaaagcgtactgcattttacacgaaagaagttggaaaagttgatattcaccctgcgtct
gttaatgctggtgttcatcttttccctcttccatacttggtttacagtgagaaagtcaag
actacaagcatttatatcagagattcaacaaatatgtcagattatgctctccttatgttt
gggggtaatctcagtccaagcaaaagtggagagggcattgaaatgctaggaggctatctt
cacttttctgcatcaaaaagtgtgttggatttgataaagaaactgcgaggggaactggat
aaaatcttaaaaaggaaaatcgaagagcccggctttgacatttcggtcgagggaaagggt
gtagttggtgctgtggttgagttacttcatagtcaagacatacgatactaa
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