Nicotiana tomentosiformis: 104095563
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Entry
104095563 CDS
T05025
Name
(RefSeq) uncharacterized protein isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104095563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nto03000
]
104095563
03019 Messenger RNA biogenesis [BR:
nto03019
]
104095563
04121 Ubiquitin system [BR:
nto04121
]
104095563
Enzymes [BR:
nto01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104095563
Transcription factors [BR:
nto03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
104095563
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104095563
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104095563
Ubiquitin system [BR:
nto04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104095563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
Nup35_RRM_2
zf-TFIIIC
FYVE
Motif
Other DBs
NCBI-GeneID:
104095563
NCBI-ProteinID:
XP_009600009
LinkDB
All DBs
Position
4:complement(14817004..14826872)
Genome browser
AA seq
862 aa
AA seq
DB search
MAIMSNEEEKRCPLCAEEMDWTDQQFKPCKCGYQVCLWCWHHIMDMAEKDESEGRCPACR
TTYKKEKVVKMQENIERAGNNNVHRKSKQSKAKPKSNEIKKDLTNARVIQRKMAYVIGLP
LSLADEDLLKRKEYFGQYGKVTKISLSRTTGGAIQQFVNDTCSVYITYSKEEEAVQCIQS
VHGFVLEGRYLRASFGTAKYCHAWLRNMPCGNPSCLYLHSIGADEDSFGKDDVAAIHTRN
RVQQIVGDISNTMNRSGNVLPPPIDELSNTSTEKSSIRNATSDAANDAMNYSSYTAHGIP
YDKDVDAGVPNRMTTFVDIVGRSNTSGAERDGNSSDDCRILDLSSDLSSVTITNDNHGRE
TYPNTTVFKVPSSHLVNNMWGNQNFVEFSDEPFREHYISSDDQGPKDSNSVAQRAFLMPS
RSAQSTEDSGDHSFVHKSYSPSGNGRDYGALHNQVDEASLPLSCVNAILNEGLHDMKFQR
SVKSDRVYRSSTSFSNEEIVQHLRRIDSDNSTNYGDSSFNAVESSIISNIMSIDFDSCDD
SMALRRSFAGVYNESDGKLGATWNSLHNDQSGFSFVKQDDFSRQGCDLESPFSNIGQVSK
NSSIPQDFRENKDQYVQKAPYQITRPKVLAPPGFSMPSGDLLRGFASSDEIGRSLSGSRL
VNSSSSSLLHTPSTGSISSAGDIDFVEPAISSCGSGKPTNGFDISALENGSACVPQRRAF
EDQARIWHLMQQKSVDQEGKFSQVFALQTPSVHQLQRFPGHGGDEYFGLDDIYGFSSMVN
QHQSFDPSSYSQFPQQKLANGNIFNGFQHNSFRDIHHSNEVDCLTELQKNERLGFKNFYA
GYGDMIFQAPRSGDIYTRVFGM
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcatgagcaatgaagaagagaaaaggtgtcctctttgtgccgaagagatggac
tggacagatcagcagtttaagccttgtaaatgtggttatcaggtgtgtctttggtgttgg
catcacataatggacatggcagaaaaagatgagtcagagggtcgatgtcctgcatgtcga
acaacatacaaaaaggagaaagtagttaaaatgcaagaaaatattgagagagcagggaac
aacaatgtccaccgaaaaagcaaacaatcaaaagcaaagccaaaatctaatgaaatcaag
aaggatctcacaaatgctcgggtcattcaacgtaaaatggcatatgtgattgggctgcct
cttagtcttgcagatgaagatcttttaaagcggaaagaatattttgggcagtatggaaaa
gtaactaaaatttctctgtctcggactactggcggtgcaatccagcaatttgttaatgat
acctgtagtgtatatattacgtattcaaaagaagaggaagccgtacaatgtattcagtct
gtacatggttttgtcttggaaggtaggtatttgagagcatcctttgggactgcaaagtac
tgtcatgcgtggttgagaaacatgccttgcggtaatccttcttgtctatatttgcatagc
attggtgctgatgaagatagttttggtaaagatgatgtagctgcaattcatacaaggaat
agagttcaacaaattgttggtgacattagtaatacgatgaatcgctcaggaaatgtcttg
ccacccccgattgatgaattatcgaatacatcgactgagaaatctagcattagaaatgca
acaagtgatgcagcaaatgatgcaatgaattacagtagctacacggctcatggaattcct
tatgataaggatgtagatgctggtgtgccgaaccgaatgacaacttttgtagatattgtt
ggacggtccaacacttcaggtgcagagagagatggaaatagcagtgatgattgtaggatt
ttggatttatcttctgacctatcttcagtaaccattactaatgataatcatggtcgtgaa
acatatccgaacacaactgtgttcaaagttccatcttcgcaccttgtcaataatatgtgg
gggaaccaaaattttgttgaattttctgatgaaccattcagggaacattatatatcttct
gatgatcaaggaccgaaggattcaaatagtgtggctcaaagggcttttcttatgccatct
cgttctgctcaatccacagaggactctggtgatcattcatttgtacataagtcatatagt
cctagtggcaatggaagggattatggagctttacataatcaagtggatgaagcttctctg
ccactttcgtgtgtaaatgcaatattaaatgaaggattacatgatatgaaattccaaaga
tctgtcaaatctgatagggtttacagaagttctacctcattctccaatgaagaaatagtg
cagcacctacggaggattgatagtgataactcgactaactatggggattcatcattcaat
gctgtagaaagcagtattatttcaaatattatgtcaatagactttgattcatgtgatgat
tcaatggccttgcgtcgtagctttgctggcgtgtataatgaatctgatgggaagcttggt
gctacctggaactctttgcacaatgatcaatcagggttctcttttgtgaagcaagatgac
ttttcaaggcaaggatgtgatttagagtctccttttagtaatattggtcaggtatcaaag
aattcatccatccctcaagatttcagagagaacaaggatcagtatgtgcagaaggctccg
tatcaaatcactagaccaaaagttttggctccacctggattctcgatgccctctggggat
ctgcttcgcggttttgcttcatccgatgaaataggacgatctctctccggaagtcgttta
gtaaatagttcttcatcaagtctgcttcacacaccatcaactggaagtattagcagtgca
ggtgatattgattttgttgaacctgccatatcaagctgtggaagcggcaagccaacaaat
ggttttgatatctctgccctggaaaacgggtcagcttgtgtgccacagaggagagccttt
gaagaccaggcaagaatctggcatttgatgcaacaaaaatctgtagatcaagaagggaaa
ttctctcaagtttttgctttacaaacaccgtctgttcatcaattacaaagatttcctggt
catggcggggatgaatattttggtctagatgatatatatggcttctcatcgatggtgaac
caacaccaaagttttgatccatcttcctattcacaatttccacaacaaaagcttgccaat
ggtaacatctttaatggcttccagcacaatagtttccgcgatatccatcatagtaatgaa
gtagactgcttgacagaactccagaaaaatgagagattaggttttaaaaatttctatgct
ggatatggagatatgatattccaggcgcccaggtctggcgatatatacaccagagttttt
ggaatgtaa
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