Nicotiana tomentosiformis: 104095734
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Entry
104095734 CDS
T05025
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104095734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104095734
Enzymes [BR:
nto01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104095734
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104095734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
104095734
NCBI-ProteinID:
XP_009600219
LinkDB
All DBs
Position
7:complement(52205674..52211815)
Genome browser
AA seq
721 aa
AA seq
DB search
MKKHCMLKPLSTTLIQISHAPITSFTTRRRALSSSSSSSSSSFALKNVTKSNFESALNDL
RGLVRDADFVAVDLEMTGVTSAPWRDSFDFDRYDIRYLKVKDSAEKFAVVQFGVCPFRWD
SHKQSFLAHPHNFYIFPRQEIPGSNQSYEFLCQTASLDFLAKYQFDFNVCIREGVSYLSR
SQEEEALERISSTFMDESSDSVYGLREDAEFPLIRMADVLFAERMKNTIREWHASLLSKG
SSSSEIKQMSTDPNQRFQMVFFKTRPALALSGFTSRQLRVIKAVTKKHFKDLSYIRVAGE
ATSPQQLIVYTDSNDDKDLLMKEVKEGLRKEAEIKVKSAVGFRHVIDLLSSERKLIVGHN
CFLDMAHIYSKFIGPLPLTVEDYVSSIQKYFPCIIDTKILLNANGVFQQRVNKSSTSLSR
AFVYICPQIALGVKTSGLADRPCVEVEVQVDENRFLNWNSGAKHEAGYDAFMTGCIFAQA
CNHLGIDFTLHVLAGGLPKETKLQNYINRLYLSWVSGDIIDLSTGKCTTDTSASSNLKSR
YQEISFPSIVLLWGLPSKLKAREIKACIVKVFGPNSISSIYHLDESAVFIQFSKPEMVSK
FLEIKETLSRNSDPISVLHPLSDILNADCTHAANYDVYQQICSSPISKKLFADQAEAVGI
KHKTASSRAEGEKKGNQVFGKENEVRVFDKKVDDMMSSSYGYSETDRSADSFHLDEALAS
K
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaacattgtatgttgaaacctctatcaacaaccctaatccaaatatcccacgct
ccgatcacctctttcactacgcgccgccgcgccctctcttcctcttcctcttcctcttcc
tcttccttcgcgctcaagaatgttaccaaatcgaacttcgaatcagctctcaatgaccta
cgaggtcttgtacgcgacgccgatttcgtcgccgtcgatttggaaatgaccggagtaacc
agcgctccttggagagattccttcgacttcgaccgatatgatattcgttacctcaaagtt
aaggactccgccgagaagttcgccgtcgttcagttcggcgtttgtcctttccgttgggac
tctcacaagcaatcctttctcgcgcatccacataacttttatatattcccacggcaagaa
atccctggtagcaaccaatcctatgagttcctttgccagacagcctcacttgatttcctg
gcaaaataccagtttgatttcaatgtgtgcatacgtgaaggagtctcttatttatccaga
agccaagaagaggaagcactggaacgtataagttcaacattcatggatgaatcatcggat
tccgtgtatggcttgagagaagatgcagagtttccattgattaggatggcagatgttcta
tttgctgaaagaatgaagaacacaataagggaatggcatgctagtttgttaagtaaggga
agcagtagctctgaaattaaacaaatgtcaactgatccaaaccagagatttcaaatggtt
ttcttcaagacccgtccagcccttgcccttagtgggtttacttctcgccagctaagggtg
attaaagcggtcactaaaaagcatttcaaagatctatcctatatcagagtagctggcgaa
gcaacatctccgcagcaattgattgtctatacagattccaatgatgacaaggatctactg
atgaaagaggtgaaggaaggccttcgtaaagaagcagaaataaaggtcaaatctgctgtt
ggatttcgacatgttattgatcttctttcctcggagcggaagttgattgtcggacacaat
tgctttcttgatatggcgcatatatacagtaaattcattggtccactacctttgaccgtg
gaggactatgtgtcttccattcagaagtactttccttgcataattgacaccaaaatactc
ttgaatgcaaacggtgtttttcaacagagagtgaataaaagcagcacatcactatccaga
gcgtttgtctatatctgtcctcaaattgctttaggtgtcaaaacttctggtttggctgat
agaccgtgtgtagaggtggaggttcaagttgatgaaaacagattcttgaactggaactca
ggggccaagcatgaagctggctatgatgcatttatgactggatgcatttttgcacaggcg
tgcaatcatctaggcattgatttcaccctccatgtgcttgctggaggtttacccaaggag
acaaagcttcagaattatatcaatcgcctttaccttagctgggttagtggagacatcatt
gatctaagtactgggaaatgtacaacagacacctcagcttctagtaacctcaaaagtcgg
taccaggagatttcatttcctagcatcgttttgttgtggggattaccatctaaactaaaa
gcaagggagatcaaagcttgtatagtaaaagtctttggcccaaattctatttcctctatc
taccatttggatgaaagcgccgtctttattcagtttagcaagccagaaatggtttctaag
tttctggaaataaaggaaactctaagtaggaacagcgatccaatttcagtgttgcatcct
ctttcggatattctgaacgccgactgcactcacgcagctaactatgatgtgtatcaacaa
atatgcagttcacccatctcaaagaaattatttgcagatcaggctgaagctgttggtatc
aaacacaaaacagcatcatccagggcagaaggggaaaaaaagggaaaccaggtatttggc
aaagaaaacgaagttagggtgtttgataagaaagtagatgatatgatgagttcatcgtat
ggttattcggaaacggatagatctgccgattcttttcatctagatgaagctctggcaagc
aaatag
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