Nicotiana tomentosiformis: 104095782
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Entry
104095782 CDS
T05025
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104095782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nto03041
]
104095782
03009 Ribosome biogenesis [BR:
nto03009
]
104095782
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104095782
Spliceosome [BR:
nto03041
]
Complex A
U1 snRNP components
U1 related factors
104095782
Complex B
104095782
Ribosome biogenesis [BR:
nto03009
]
Eukaryotic type
Pre-60S particles
Helicases
104095782
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
DUF4436
Motif
Other DBs
NCBI-GeneID:
104095782
NCBI-ProteinID:
XP_009600279
LinkDB
All DBs
Position
7:85623253..85639263
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AA seq
579 aa
AA seq
DB search
MSYVPPHLRNFSAGKTTTLNSDGAAADYFSSKLSSHQSRIHCNGELDKSSSNGYSNSSRR
SSVNYSTASRTAIPDPEFPQWKPSERVLRLKSEQIEEIRLRLNVDVNVAPGSSSAPAPIE
SFPDMCLHPSIMKDIEKHGYTAPTSIQAQSMPVALSGRDLLGCAETGSGKTAAFSIPMIQ
VANFMSMSYCESVSVHCLAQQPLQRGDGPLALVLAPTRELAQQIEKEVTAFSLSLDSFKT
SIVVGGTNISEQRSELRAGVHIVVATPGRLIDHLQQGNTSLCRISFVVLDEADRMLDMGF
EPQIREVMRNLPEKHQTLLFSATMPTEIEALAQDYLTNPVRIKVGKVSSPTANVSQILEK
VPENDKIDRLLDLLVEEAAQSERSGHPFPLTIVFVERKTKCDEVAEALTQQGLLATALHG
GRSQSEREAALRDFRHGPINILVATDVASRGLDVTGVGHVINLDLPKTMEDYVHRIGRTG
RAGSTGRATSFYTDRDMYLVAQIRRAIADIGSGNDVTFAMGKTARRKEREAAAAEKEARS
TLSKLSLVESAVNVEDKYRHMITPAMIKKEGAADDAWDD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatgtacctcctcacctgagaaacttttctgccggcaaaaccaccactctgaac
agtgacggcgccgccgccgattacttctcatcaaaactcagctcgcatcagtccagaatt
cattgcaatggcgagctcgacaagtcctcgtccaacggatactctaattcatctcgccgg
agctccgttaattactcgacggcatcgagaacggccatccctgaccctgagtttccccaa
tggaagccttccgaacgtgttctccgtcttaaatccgagcagatagaagagattcgatta
aggcttaacgttgatgtaaatgttgccccaggctcaagttctgcacctgcacctattgaa
tcatttcctgatatgtgcttgcatccaagcatcatgaaggatattgaaaagcatggctac
actgcaccgacttctattcaggctcaatccatgccagttgctcttagtggcagagatctc
ttgggttgtgctgaaactggtagtgggaagaccgctgcgttcagcatacctatgatacag
gttgcgaatttcatgtccatgtcatattgcgaatctgtcagtgtgcactgtttggctcaa
caacctcttcaacgtggtgatggacctttggcattagtgttggcgcctacgagagagctt
gcgcaacaaatagagaaagaggttacggctttcagtctgtcactggattcctttaagacc
tcaattgttgtaggtgggacaaacattagtgaacagaggtctgaacttcgagcaggagta
catatagtggttgctactccaggaagacttatagatcatttacagcaaggaaatacttcc
ctctgcaggatctcttttgttgttttggatgaggctgatagaatgcttgatatggggttt
gaacctcagataagagaggtgatgcgaaatcttccagaaaagcatcaaacactgctcttc
agtgccaccatgccaacagaaattgaagcattggcacaggattacttgactaatccggtg
cggataaaagttggaaaagttagcagcccgactgcaaatgtttcccagattttagagaag
gtacctgaaaatgataagattgaccgacttttggatttgttggttgaggaggcagctcaa
tctgaaagatctggtcatcccttccctttgaccattgtatttgtggaaaggaagacgaag
tgtgatgaagtagcagaagctttaacgcagcagggtttgcttgcaactgcacttcatggt
ggtcgtagccaaagtgaaagagaggccgcccttcgtgatttcagacacggtcctatcaat
atcttggtcgcgactgatgttgcgtctaggggattggatgtcacaggagttggacatgta
attaacctagatctcccaaagaccatggaagattatgtacaccggattggaaggactggt
cgtgcaggatcaacgggccgagctacttcattttacactgatcgtgatatgtatcttgtg
gcacaaatacgaagagctattgctgatatcggttctggtaatgatgtgacctttgctatg
ggaaagactgctagaagaaaggagagagaggctgcagctgccgaaaaagaagcaaggagt
acattgtctaaactctctttagtcgagtctgcggtaaatgtggaggataaatataggcac
atgattaccccagcgatgataaaaaaggagggagctgcagatgatgcttgggatgactga
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