Nicotiana tomentosiformis: 104096075
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Entry
104096075 CDS
T05025
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03082
ATP-dependent chromatin remodeling
nto03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104096075
03083 Polycomb repressive complex
104096075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nto03036
]
104096075
Chromosome and associated proteins [BR:
nto03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
104096075
Histone modification proteins
HAT complexes
HATB complex
104096075
HDAC complexes
Sin3A-HDAC complex
104096075
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
104096075
PRC2.2
104096075
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
104096075
Heterochromatin formation proteins
Other heterochromatin formation proteins
104096075
Chromatin remodeling factors
NuRD complex
104096075
NuRF complex
104096075
NuRF complex (fruit fly)
104096075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_EIPR1
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EML
WDR55
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_IFT122_1st
eIF2A
Beta-prop_WDR35_TULP_N
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
104096075
NCBI-ProteinID:
XP_070053905
LinkDB
All DBs
Position
3:complement(148110330..148120125)
Genome browser
AA seq
459 aa
AA seq
DB search
MKEERAAKGGEQRSVDERYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQFEQATYKNRQ
RLYLSEQTDGSVPNTLVIANCEVVKPRVAAAQHISQFNEEARSPFVKKYKTIIHPGEVNR
IRELPQDSKIVATHTDSPDVLIWDVESQPNRHATLGVNNSRPDLILTGHQDNAEFALAMC
PSEPFVLSGGKDKSVVLWSIHDHVSTLAADQGATKSPGSGASNSKPSAEGPTVQARGIFQ
GHDDTVEDVQFCPSSAQEFCSVGDDSCLILWDARTGSSPAVKVEKAHNADLHCVDWNPHD
VNYILTGSADNTVRMFDRRNLTSGGVGSPIHIFEGHTAAVLCVQWSPDKSSVFGSSAEDG
ILNIWDHEKIGKMEDSAGRKASTSPPGLFFRHAGHRDKVVDFHWNAADPWTIVSVSDDGE
STGGGGTLQIWRMIDLIYRPEDEVLNELEKFKSHLLTCS
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagagagagcggcgaaaggcggagaacagcggtcggtggacgaacgttacaca
cagtggaagtcactggttcctgttctctacgattggcttgctaaccacaacctcgtttgg
ccttccctctcctgtcggtggggtccccagtttgagcaagcaacttacaagaaccgccag
cgcctctacctttctgagcagactgatggtagcgttccaaatacgcttgtcatagctaat
tgtgaagttgtaaaacctagggttgcagcagcacaacacatatctcagttcaacgaagaa
gcacgttcgccttttgtaaagaagtacaaaactattattcatccgggtgaggtgaatcga
ataagggaactgcctcaggatagcaagattgtggccacacacactgacagtcctgatgtt
cttatttgggatgttgagtctcagcctaaccgtcatgctaccttgggcgtaaataattct
cgaccggacttgatattgactggacatcaagacaatgctgaatttgcgctcgctatgtgc
ccttctgagcctttcgtgctctctggagggaaggacaaatcggttgttctgtggagcatt
catgaccatgtgtcaacattagcagcagaccagggagctacaaagtctcctggatctgga
gcaagtaactcgaaaccttctgcagaaggccctactgttcaagctcgaggtattttccaa
ggacatgatgataccgtagaagatgttcagttttgcccttccagtgcacaggagttttgc
agtgttggagatgattcctgcctaatactgtgggatgcaagaactggttcttctcctgct
gtcaaggtagagaaggctcataacgctgatcttcattgtgttgattggaatcctcacgat
gtaaattatattttgactgggtcggcagacaacactgttcgcatgtttgatcgacgaaac
ctcacttctgggggagtgggatcgcctatacatatctttgagggccatactgctgctgtg
ctttgtgtacagtggtccccagataaatcatcagtctttggaagttctgcagaagatggt
atcctgaacatctgggatcatgaaaagattggtaagatggaggactctgctggtagaaaa
gcttcaacatctcctcctggcttattttttcgtcacgctggacatagggataaggtggtt
gacttccactggaatgcagcagatccatggaccattgttagtgtctcagatgatggtgaa
agtactggcggaggcggtacattacagatatggcgaatgattgatctcatttacagaccc
gaagatgaggttctcaatgaactagagaagttcaagtctcacctgctcacttgttcttag
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