Nicotiana tomentosiformis: 104096692
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Entry
104096692 CDS
T05025
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03018
RNA degradation
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104096692
09123 Folding, sorting and degradation
03018 RNA degradation
104096692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104096692
03041 Spliceosome [BR:
nto03041
]
104096692
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104096692
mRNA degradation factors
5'-3' decay
Lsm complex
104096692
Spliceosome [BR:
nto03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
104096692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
104096692
NCBI-ProteinID:
XP_070042421
LinkDB
All DBs
Position
10:35488554..35498829
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AA seq
146 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
VRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRGRGRGGRDDSAVGRQAKGIGRGMD
DGGAKGRGKGGPSAKSGGRGGGRGRG
NT seq
441 nt
NT seq
+upstream
nt +downstream
nt
atgctcccactctcactgctcaagactgcacaggggcatcccatgttggtggaactaaaa
aatggggaaacgtataatggtcatttggtcaactgtgatacctggatgaatatccatctt
cgtgaagttatctgtacttcaaaggatggagatagattttggagaatgccagaatgttac
gttcgtgggaatacaataaaataccttcgagtacctgatgaggtgattgataaggttcag
gaggaggcaaaaagccgtacagatagaaaaccgcctggtgtaggacgtggaaggggaaga
ggaggtagagatgacagtgctgtggggagacaagcaaaaggaattgggcgtgggatggat
gatggaggtgccaaaggccggggcaaaggaggacctagtgccaagtctggtggcagaggt
ggaggtcgcggacgtggctga
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