Nicotiana tomentosiformis: 104097188
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Entry
104097188 CDS
T05025
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104097188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104097188
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104097188
mRNA degradation factors
5'-3' decay
Decapping complex
104097188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WDR55
Beta-prop_EML_2
7TMR-HDED
Motif
Other DBs
NCBI-GeneID:
104097188
NCBI-ProteinID:
XP_009602017
LinkDB
All DBs
Position
8:8520962..8531501
Genome browser
AA seq
1421 aa
AA seq
DB search
MASAGNPNQPGGVPFDMHKFFNPSTPPPPTSTNPNPQNPINPTLISSPFPLPSASYPPPT
AGGGGGGSGGLYYPPHTTTPFHHIPQFNPNIPTQYAPQQQDGHLHPQRSMSFPTPPLQPP
TPTSPHQFLNPNPNPNHGARLMALLSAPPSSTLEVSSQQPTTLQIIPPLQPTTSGSELSD
FSASPNVLPGPARMQSTKLPKGRHLNGENVFYDIDARLSGEVQPQLEVTPITKYGSDPGL
VLGRQIAVNKSYICYGLKLGAIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASV
DGRVYIWKITEGPDEEDKPQITGKIVIAIQIVGEGESVHPRVCWHCHKQEILVVGIGKHV
LKIDTTKFGKAEVFSADEPLRCPVERLVDGVQLVGTHDGEVTDLSMCQWMTTRLVSASVD
GTIKIWEDRKPLPIAILRPHDGNPVNSATFLTAPQRPDHIILITGGPLNREMKIWVSASE
EGWLLPSDADSWHCTQTLELKSSEARAEEAFFNQVVALSQAGLLLLANAKKNAIYAVHLE
YDLNPMATHMDYIAEFTVTMPILSFTGTSDLLPHGEQIVQVYCVQTQAIQQYALDLCQCL
PPPMENVVGFERTESSVSCDAARIEGYAPVDPPGSKQMEFPLTSSAPKSSVNESVTEIVA
TTRPPMTEARTALTTSVEFASSTVQSKSASLPSITTDTDIAPFASPPPLSPELARKFSGV
RSTSNSSERGPSINDHVGDLKVGEYSVDRQMDAIHPNLSGLTSSDGDPRNNDDEVPRDDG
SSGVGNPIKFKHPTHLVTPSEILMANSSSEVNHVNEQKSEGESSIQDVVINKEARNVEVE
VKVGETRFNQKTDIGSQEELHTFVSENKEKAFCSQASDLGIEMARECHALSPETYIVEES
RQFDGACGTERLTQPSTAPEEDHDSAKEISGNDLDSNVQVSAHQLSAPRAKGKKQKAKNT
QGFRPSSPSPSAFNSSESIDGGVSSSSTSMEAAFSQILSMHEMLNQLLNMQKETQKQMGM
MVAVPVTKEGRRLEAALGRSMEKAVKANSDVLWARFQEESAKQENSLRDRTQQITNMISN
CFNKDMPGLIEKIMKKELAAVGQAVTRSIAPTVEKAVSTAISEAFQKGVSDKAVNQLERT
VSSKLEASVARQIQAQFQTSGKQALQETLKSTLEASVIPAFEMSCKSMFEQVDLTFQKGF
AEHTAAVLQQFESMHSPLAIALRDAINSASSMTQTLSGELADGQKKLLTLAVSGANSNSP
NPLITHMSNGPLLHEKLEVPVDPTKELSRLLTERKYEEAFTAALQRSDVSIVAWLCSQVD
LPGILSMNPLPLSQGVLISLLQQLACDVSSETARKLSWMRDVLTAINPTDPMIAVHVRPI
FEQVYQILIHHRNLPTTTPAELSSIRLIMHVINSMLMTSSK
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgccggaaatccaaaccagcccggcggagtaccgtttgatatgcataaattc
ttcaatccttcaactcctccaccgccaacttcaacaaaccctaatccccaaaatcccatt
aaccccactttgatttcttccccatttccacttccttcagcttcttatcctccgcccacc
gccggcggaggtggcggtggtagcggaggactgtattatccacctcatacaacaacccct
tttcaccatatccctcaattcaatcccaatatccccacacaatacgcacctcaacaacaa
gatggccatttgcatcctcaaagatccatgtctttccctacccctccacttcaaccacct
actcctactagtcctcaccaatttttgaaccctaaccctaaccctaatcatggggcgaga
ctcatggctttgttaagtgcaccaccttcttcaactctagaagtttcgtctcagcaaccc
accactttgcaaattattcctcctttacagcctacaacttctgggtctgagctttctgat
ttttctgcttcaccaaatgttttacccggcccggctcgaatgcagagtactaagttgcct
aaagggagacatttgaatggggagaatgttttttatgacatagatgctaggttgtctggt
gaagtgcagcctcagttggaggttactccaattactaagtatggttcggatccgggcctt
gttttgggccggcaaattgcagttaacaaaagctatatatgttatggactcaaattggga
gctattcgagtgcttaatattaacactgccttgagatcattgcttaaaggtcttgcacag
agggtcacagacatggctttctttgctgaagatgttcaccttttggctagtgcaagtgtt
gatgggcgtgtttatatatggaaaattactgaaggaccagatgaggaagataagccccaa
attacagggaagattgtcattgctattcaaattgttggtgaaggggaatctgttcatcct
cgagtttgttggcattgtcacaaacaagaaattcttgtggttggaatcggaaaacatgtt
ctaaaaattgataccacaaaatttggaaaagctgaagttttttcagcggatgaacctctc
aggtgtcctgttgagaggttggttgatggggtacaacttgttggtactcatgatggagaa
gtgactgatttgtcaatgtgccagtggatgaccactcgattggtatctgcttctgtggat
ggcacgattaagatttgggaagaccggaagccactaccaattgcaattctcaggcctcat
gatggtaatcctgttaattcagctaccttcctgactgctccacaacgcccagaccacatc
atactcatcactgggggtccacttaatcgagaaatgaagatatgggtatcagctagtgaa
gaaggctggttgcttcctagtgatgctgattcatggcactgtacacaaacattagagttg
aagagttctgaagctcgtgctgaagaggcattttttaaccaagttgtagccttgtctcaa
gcaggtctgctcttactagcaaatgcaaaaaagaatgcaatatatgctgttcatctagag
tatgacctgaacccaatggcaacccatatggattacatagctgaatttacagttacaatg
ccaattttgagtttcactggaacaagtgatttactgcctcatggtgaacagattgttcaa
gtgtattgtgtgcagacacaggctattcagcagtatgctttggacttatgccaatgcttg
ccacctcccatggagaatgtggtgggcttcgaaaggacggaatctagtgtttcatgtgac
gctgctcgtattgaaggatatgctcctgttgatccccctggcagtaaacaaatggagttt
cctttaactagttctgcacccaaatcttcagtgaatgagagtgtcacagagattgtagct
acaactagacctcctatgactgaagcgcgcactgccttgaccacctctgtggaatttgct
tcttccaccgtgcaatctaaatcagctagtttgcccagtataactaccgatactgatatt
gccccctttgcatcaccaccgcctttgagtcctgagttggctagaaaattttctggtgtc
agaagcacatcaaacagctctgagcgtggtccctctatcaatgaccatgttggggatctt
aaagttggtgagtattcagtcgataggcaaatggatgccattcatccaaacttgtctggt
cttacttcgtcggatggtgacccaaggaataatgatgatgaagtgccacgtgatgatggt
tcttcaggtgttggtaatccaattaagtttaagcacccgactcatctggtgactccttca
gagatattgatggctaactcatcctctgaggtaaaccatgttaatgagcagaaaagtgag
ggagaatcgagcatccaggatgttgtaatcaacaaggaagcccgcaatgtggaggtggag
gttaaggttggtgaaacaagattcaatcaaaaaactgatattggctctcaagaagaactt
catacttttgtgtcggaaaacaaagagaaagccttttgctctcaggcatctgatcttgga
atagaaatggctcgagaatgtcatgccttatcgcctgaaacttatattgtcgaggaatct
aggcagtttgatggggcttgtggaactgagcggctgacccaaccgtcaactgccccagaa
gaagatcatgactctgccaaggagatctctggaaatgatttagactcaaatgtgcaagtt
tctgcgcatcaactttcagctcctagagccaaaggaaaaaagcaaaaggcgaagaacact
caaggatttagaccatcttcaccctcgcctagtgctttcaactcatctgaatccatcgac
ggtggtgtcagctcaagtagcacctctatggaagctgcattctcacaaattttgtccatg
catgagatgctaaatcagcttcttaatatgcaaaaagaaacacaaaagcagatgggtatg
atggtcgctgttcctgttaccaaagaaggaagaagactcgaggctgccttgggacggagc
atggagaaggctgtcaaggccaactccgatgtcttatgggctcgtttccaagaagagagt
gcaaaacaagagaactcacttcgtgatcgtactcaacaaataaccaatatgatatctaac
tgctttaacaaggacatgccggggctaattgaaaaaataatgaagaaagaactggcagct
gttggacaagccgtcacacgcagtattgcccctacagttgagaaagctgtatcaactgct
atttcagaagccttccagaaaggagttagtgacaaggcagtgaaccaactggagagaaca
gttagctccaaactcgaagcttctgttgctaggcaaatccaagcgcaattccaaacctct
ggcaagcaagcacttcaggaaactttgaaatctacattggaagcttcggtgattcctgcc
tttgagatgtcatgcaaatcaatgtttgagcaagtagatttgacgtttcagaaaggattt
gctgaacacactgctgctgttctacaacaatttgagtccatgcattcaccattagcaatt
gctttaagggatgccattaattccgcatcatcgatgactcaaacattgagtggagagtta
gctgatggtcaaaagaagttgcttactcttgcagtttctggagctaattccaattcacca
aatccactgattacccacatgagtaatggaccattactgcacgagaagcttgaggttcct
gttgatccaaccaaagaactatctagattgttaacggagcgcaagtacgaggaagcattc
actgcggctttgcaaagaagtgatgtgtctattgtagcgtggttatgttctcaggttgat
ttaccgggtattttgtcgatgaatcctctcccgttgagtcaaggagttcttatttcgctt
cttcagcagttggcctgtgatgttagcagtgaaacagcccgaaaactgtcctggatgagg
gatgtgctaaccgccataaatccaactgatccaatgattgcagtgcacgtgcgacctatc
tttgagcaagtatatcagatactaatccatcatcggaatcttcctacgacaacccctgct
gaactttcaagcattcggctgattatgcatgtcatcaactcgatgctgatgaccagtagt
aaatga
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