Nicotiana tomentosiformis: 104097403
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Entry
104097403 CDS
T05025
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X2
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104097403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nto03021
]
104097403
Transcription machinery [BR:
nto03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
104097403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
DZR
Zn_ribbon_3
DUF1258
Zn_Ribbon_1
Motif
Other DBs
NCBI-GeneID:
104097403
NCBI-ProteinID:
XP_009602254
LinkDB
All DBs
Position
5:complement(136499632..136515014)
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AA seq
535 aa
AA seq
DB search
MSIDLVLKPSCSRCGSTSELYGSTCKHLTLCMSCGKNMAETRDKCYECGTPITRLIREYN
VRACSSNDKNYFIARFASGLPNFSKKKNESKWTLQKEGLQGRQVTDTLREKYKNKPWLLE
DETGQFQFHGQLEGAQSAQYYLLMMQGEELVAIPAGSWYNFNKVAQYKQLTLEEAEEKMK
NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKESGSGGTRGRKKTSGDEEEGNGSDHGD
EDEEEEAARKSRLGLNKRGADDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVGN
DPEEREDLAPEIPAPPEIKQDDEDEDEGDEEGGGLSKSGKELKKLLGKTNGLNESDAEDD
DDDDDTEEDISPVLAPKPKEAPKEEPIDTSSPSKPSASGPTRGTPTSKPAKTKRKANGDD
SKPTNGAPLKKVKTETDAKPGKDETPATAKNSVLPKGASPSSKTAPSPATGPVTEEEIRA
VLLQRKPVTTQDLVSQFKSRLKCKEDKAAFADVLRKISKIQKTGTGTSYVVLRER
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatagatttggtactgaaaccgtcgtgtagcaggtgcggctccacgtcggagttg
tacggaagcacctgcaagcacttgactctttgcatgtcttgtggtaaaaacatggctgag
actcgtgataaatgctacgagtgtggcactccgatcacgcgactgattcgagagtataat
gttcgggcttgctccagcaatgacaagaattatttcattgctcgatttgcttcaggctta
ccgaacttttcaaaaaagaagaatgagagtaaatggactttacaaaaagaaggtttgcaa
ggacgtcaagttacggatactttgcgggaaaagtacaagaataaaccatggctattagag
gatgaaaccggtcaatttcagttccatggtcagcttgagggagcacagtcagcgcaatat
tatctattgatgatgcagggtgaagagttggttgctattccagctggttcttggtacaac
ttcaacaaagttgcccaatataagcaacttactctggaggaagcagaggagaaaatgaaa
aatagaaggaaaactgcagatgggtaccagagatggatgatgaaagcagcaaataatgga
cctgctgccttcggtgaagtagaaagatttgatgacaaggaaagtggatctggtgggaca
agggggcgtaagaaaacttctggtgatgaggaggaaggcaacggttcggaccatggggat
gaagatgaggaagaggaggctgctaggaaaagcaggttgggactcaacaaaagaggcgct
gatgatgatgaagagggtcctagagggggtgatcttgacctggatgatgatgatattgaa
aaaggggatgattgggagcatgaagagatttttacggatgatgatgaagctgttgggaat
gatcctgaggagagggaggatttggctcctgaaattcctgctcctccagagattaagcag
gatgatgaggacgaggatgaaggtgatgaagagggagggggtttgagtaaatctggtaaa
gagttgaaaaagttgcttggaaaaactaatggattgaatgaatcagatgctgaggatgat
gatgatgacgatgatacagaagaggatatttcacctgtattagctcctaagccgaaggaa
gctcctaaagaagaacccatcgacaccagcagtccttcgaaaccatctgcttctggaccc
actcgtggaactccaacttcaaaaccagctaagactaaaagaaaagctaacggtgatgac
tcaaaaccaaccaatggtgctcccttgaaaaaagtgaaaacagaaacggatgccaagcct
gggaaagatgaaactccggctactgcaaagaacagtgttctcccaaagggtgcatcaccc
tcttccaaaactgctccaagtcctgccacaggtcctgttactgaagaagaaattagagct
gttttattgcagagaaaaccagtgaccacacaggatcttgtcagccaatttaaatctcgt
ttaaaatgtaaagaggataaggctgcttttgctgatgtattgaggaagatctccaagata
cagaagaccggtactggaacgagctatgttgtgttacgagagaggtga
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