Nicotiana tomentosiformis: 104098799
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Entry
104098799 CDS
T05025
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 11-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
nto
Nicotiana tomentosiformis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104098799
03041 Spliceosome [BR:
nto03041
]
104098799
03036 Chromosome and associated proteins [BR:
nto03036
]
104098799
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104098799
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104098799
mRNA cycle factors
Common to processing body (P body) and stress granule
104098799
Spliceosome [BR:
nto03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104098799
Chromosome and associated proteins [BR:
nto03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104098799
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
104098799
NCBI-ProteinID:
XP_009603916
LinkDB
All DBs
Position
11:complement(125890006..125899569)
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AA seq
593 aa
AA seq
DB search
MAMSWADSVSAAENPAGAASKSAYVPPHLRNRPSIEPPAQASYAGAAALGNDHSGYGVPN
VVGSRWSGQRTENRSGYVGGGGRGGGWNGGRGGWDREVNPFTDEDSEPFSEQESSGINFD
AYEDIPVETSGDNVPPPVNTFADIDLGEAVNENIRRCKYVKPTPVQRHAIPISLAGRDLM
ACAQTGSGKTAAFCFPIISGIMRGHFPRPPRPRVAFPLALILSPTRELSCQIHDEAKKFS
YQTGVRVVVAYGGAPINQQLRELERGVHILVATPGRLVDLLERARVSLQMIRYLALDEAD
RMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSSYIFLAVGRVGS
STDLIVQRVEYVLETDKRSHLMDLLHAQRENGVHGKQALTLVFVETKKGADSLEHWLCMN
GFPATAIHGDRTQQEREYALRSFKTGHTPIMVATDVAARGLDIPHVAHVVNFDLPNDIDD
YVHRIGRTGRAGKTGLATAFFNENNSSLAKSLSDLMTEANQEVPAWLSRFAARSNYGGKS
RRGGGRFGGRDFRRDSSYNRGAADYYGGANMSSGYASGGYSSYGAAGVTSAWD
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgtcgtgggctgattctgtttctgcagccgagaatccggctggtgctgcgtcc
aagtcagcatatgttccaccacatctaagaaacagaccgtcgatagaacctcctgcacag
gcttcgtatgctggtgctgctgcattaggtaatgaccacagtggttatggtgtcccaaat
gtggttggcagtcgttggagtggtcaaaggactgaaaaccgatctggttatgttggtgga
ggaggacgtggtggtggttggaatgggggacgtggtggttgggatcgtgaggttaacccc
tttacggacgaagatagtgaaccctttagtgaacaagagagttctgggatcaatttcgat
gcatatgaggatattccagtggaaactagcggggataatgtgccccctcctgtgaatact
ttcgcagatattgatttaggtgaagctgtcaacgaaaatattaggaggtgcaagtatgtt
aagccgacccctgtgcaacgacatgctatacctatttcacttgcggggagggatttgatg
gcttgtgctcaaactggttctggaaaaactgctgctttctgcttccccattataagtgga
atcatgaggggccactttcctagacctccacgtccacgtgtggcatttcctctagctctt
attctctccccaacgagggagctctcatgccaaattcatgatgaagctaaaaaattttca
tatcaaactggcgtcagggtggttgttgcctatggtggtgctcctataaaccaacagctt
cgagaattagagagaggtgtgcatattcttgtggcaacccctgggcggttagttgattta
cttgagagagcaagagtctcgttgcagatgataaggtatttggctctagacgaggcagat
cgaatgcttgatatgggttttgaacctcaaataaggaaaatagtgcaacagatggacatg
cctccgccaggtgtacgacagaccatgctgttcagtgccactttcccaaaagagattcag
agactagcctcggattttctatccagttatatctttttggctgtgggaagggtcggctct
agcacagatttgattgtccaaagagttgaatatgttctagagactgacaagagaagtcac
ttgatggatcttcttcatgcacagagggaaaatggtgttcatggcaagcaagctcttacc
cttgtttttgtggagactaagaagggagccgattcactggagcattggctttgtatgaat
ggtttccccgctactgctattcatggcgatagaactcagcaggaaagagaatatgccctg
agatccttcaaaactggtcacacaccaattatggttgcaacagatgtggcagcacgtggt
ctcgatatcccccacgttgcacatgttgtcaactttgacctgccaaatgacattgatgac
tatgtgcaccgtattggaagaacaggacgagcaggaaaaacgggtttagctactgctttc
ttcaacgagaacaattcttcattggcaaaatcactgtctgacttgatgacagaagcaaac
caagaagtacctgcttggctctctcgctttgctgctcgatctaactatggagggaaaagt
cgacgtggtggaggtcgttttggtggtcgtgactttcgaagagattcctcttacaatcga
ggcgctgcagactattatggtggtgccaatatgagcagtggatatgcatctggggggtat
tcatcatatggagcagcaggtgtgactagtgcatgggactaa
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