Nicotiana tomentosiformis: 104098806
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Entry
104098806 CDS
T05025
Name
(RefSeq) uncharacterized protein isoform X2
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03013
Nucleocytoplasmic transport
nto03015
mRNA surveillance pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104098806
09122 Translation
03013 Nucleocytoplasmic transport
104098806
03015 mRNA surveillance pathway
104098806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104098806
03041 Spliceosome [BR:
nto03041
]
104098806
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104098806
Spliceosome [BR:
nto03041
]
Complex C
Other components
EJC/TREX
104098806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Hexapep_GlmU
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
104098806
NCBI-ProteinID:
XP_009603923
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All DBs
Position
5:complement(107132174..107184832)
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AA seq
805 aa
AA seq
DB search
MSSPYPIIDNPPIDQLKVTELKEELKRRNLPIKGLKQELVRRLAEAILEEQDAAHSKSEN
DSDSTPVPEKEMAEPVDSENSKDDFDAGNITDKKADEKMSEVDAAENRVQSDEGKFSIEE
PVGGAISTMVEKDPIDQFGDAKSSAPTEEDQIAEVSVVQTSEHVSVSVESVTALSGQDSL
KYETQNESGDLKEQLENPISNSSLVEEKVSSSILESQVSEVSPVLGFQVKSDFVSTDVSI
SEKTELKDNVIANDVKLELDIKPEMVQLLSSSDVPDDAKLHPMDVEEPHDKKVSTEEPGK
ENEKYPEVSVVQTSDPVSVSVESATALSGQDSQKYEIQNESGDLKEQRENHISNSSLDEA
KISSSNLETQVSELSPILGFRVKSDSVSTDISIDEKIELKDNVIANDVKLELDVKPEMVQ
LLSSSDVPDDAKLHPMDVEKPVSTEEPGNENDKYVDIMKTDGNGDSAEKLQLDRSPGEDS
MEEDVSDGKLADSKLDSVKETDGKKEIEMDTNREVGFVASVDDARSAAHIDTNVEDDSPT
VLSMKRKLHDQGTAAGSNDIVKRQRRWNSEDLKIPENKKGDAVASTTPKDFFQPSFRRSF
SRSDSMAKEEPPKERVVPPSSKVPTNSLLIGNFLRPFTLKAVQELLSKTGTVTNFWMDAI
KTHCFVSFSSVEEAIETRNAIYNLQWPPHVGKLLVAEFVDPQGVKDKVEAPPQSPSTHAT
PVTTISAAAVPSAQRQPSPRQQMQNRQLQPEKLPPPPLPEKLDPPIVTLDDLFKKTKATP
RIYYLPLSDDQVAEKLKAQGKIIKQ
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcaccgtatcccattattgataatccgccaattgatcagttgaaggtcacagag
ctgaaagaagagcttaagagacgtaatctgcccattaaggggttgaagcaagagttggta
aggcgattagctgaagcaatcctcgaagaacaggatgctgctcattctaagtctgagaac
gatagtgattccacgcctgtgccagagaaagaaatggctgaacccgttgattctgagaat
tccaaggatgattttgatgctggcaatatcacagataagaaagcggatgagaaaatgagc
gaggttgatgcagctgaaaacagagtgcaatcggatgaagggaaattctcaattgaggag
ccggttggtggtgctatttctactatggttgaaaaggatccgatagaccaatttggtgat
gcgaaaagcagtgctccaaccgaagaggaccagatagctgaagttagtgttgtgcaaacc
agtgaacatgtcagtgtgagtgtagagtctgtcacagctttaagtggacaggactcgcta
aaatatgaaacccagaatgagagtggagatttaaaagagcagttggagaatcccatttca
aattcttcactagtggaggaaaaggtcagttcatccattctggaaagtcaggtatctgag
gtcagccctgttttagggttccaagtaaaatctgattttgtttcaactgatgtctcaatt
agtgaaaaaacagaactgaaggataatgtaatagctaatgatgtcaagttagaattagat
attaaacctgagatggtgcagctattgtcgagcagtgatgtccctgatgatgcaaaattg
catcctatggatgtagaagaaccacatgacaagaaagtatctacagaagaaccaggcaag
gaaaacgagaaatatcctgaagttagtgttgtgcaaaccagtgatcctgtcagtgtgagt
gtagagtctgccacagctttaagtggacaagactcgcaaaaatatgaaatccagaatgag
agcggggatctaaaagagcagcgggagaatcacatttcaaattcttcactggatgaggca
aagatcagttcatccaatctggaaactcaggtatctgagctcagccctattttagggttt
cgagtaaaatctgattctgtttccactgatatctcaattgatgaaaaaatagaactgaag
gataacgtaattgctaatgatgtcaagttagaattagatgttaaacctgagatggtgcag
ctattgtcgagcagtgatgtccctgatgatgcaaaattgcatcctatggatgtagaaaaa
ccagtatctacagaagaaccaggcaacgaaaacgataaatatgttgatataatgaagacg
gatggcaatggggattctgcagagaagttgcaattagaccgaagtcctggtgaggattcc
atggaggaggatgtttcagacggtaaattagctgattctaagttggactcagtgaaagaa
acagatggaaagaaagaaattgaaatggacacgaatagggaggtaggatttgttgcttct
gtggatgatgctaggtcagctgcccatatagataccaatgttgaagacgatagtcccact
gtgctgtctatgaaaagaaaacttcatgatcaaggaacagcagctgggagcaatgatatt
gtaaagaggcagcgtagatggaattcagaagatcttaaaattcctgagaacaagaaaggt
gatgctgtggcctcaactacccccaaggattttttccagccctctttcagacgtagtttc
tctagatctgattcaatggccaaggaggaaccaccaaaagaacgtgtggttcccccatca
tcaaaagtgcctactaattctctcttgatcggaaattttctgcggcctttcaccttgaaa
gcggtgcaagagctacttagcaagacgggtactgtgacaaatttctggatggacgctatt
aaaacccactgctttgtttctttttcatctgtagaagaagctatagaaactcgaaatgct
atatacaatctgcaatggcctccgcatgtaggaaagctacttgttgctgagtttgttgat
ccccagggagtgaaagataaggttgaagcaccacctcaatctccttcaactcatgcaact
cctgtgaccacaatctcggctgcggccgtgccttctgcccagcgccaaccatccccaagg
caacagatgcagaacaggcagcttcaacctgagaaacttccaccacctccacttcctgag
aaactcgaccctccaattgtcactctggatgatctctttaaaaagacaaaggcaacacct
cgcatttactatttgcccttgtctgatgaccaagttgcagaaaagttgaaggcacaaggg
aagattatcaagcagtag
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