Nicotiana tomentosiformis: 104098947
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Entry
104098947 CDS
T05025
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104098947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nto03041
]
104098947
Spliceosome [BR:
nto03041
]
Complex A
U1 snRNP components
U1 related factors
104098947
Complex B
104098947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
104098947
NCBI-ProteinID:
XP_070052970
LinkDB
All DBs
Position
3:41532992..41561574
Genome browser
AA seq
1010 aa
AA seq
DB search
MANNSHFTGMQPPIPPLAGPPGPHQGAIPSMSLQQFQPMLPPQQAQPYVSGPSQQFQPLG
HTNVAMPPQPSQIQFPQPMQQVAGRPVVGGHIMPQGPPTPHDFQRNRPVTPVQAPLQPNL
PMSNNHMPGAGGPSLPLSSSYNQVNADSSSSQYQMQTHDHSFPSGGQPWMSTSNHNVNSV
TNMQKTGELAAHLAVPEAVYGVDSVETALSDWIEHASRKGKKYYYNRRTRISSWEKPLEL
MTDMERADASTDWREFTSPQGKKYYYNKVTRKSKWKMPDEVKLARQGMKVDLVKGLGKER
DSISHASDFGSISGVKTSSPSANGSLVSAQGAMSSPIAVAPVSNLPTIVASESSSLSGNI
SSLTIGAVEMQNSLEPASPAVATSEKNGTAVTLENSVATPVTSSEFPSAQDSIVYEDGVS
LENTEEVKKDATISETGSVTPSEEKTVEPGPLVYESKAEAKSAFKILLESANIGSDWTWD
QAMRAIINDRRYGALKSLGERKQAFNEYLSHKKKLEAEERRVKQKKAREDFRIMLEECKE
LAPSTRWSKAISIFEHDERFKAVERAKDREDLFEDYMEKLEKKERARALEEQKRNRVEYL
EFLKSCDFIKASSQWRKVQDRLEDDERCSCLEKIDRLEIFQEYIRDLEREEEEHRKLRMD
ELRKAERKNRDEFRKLMEEHLAAGILNAKTNWRDYCIKVKDLPAYQAVSSNTSGPTAKDL
FQDVFDELEKQYLDDKSRIRDAVRMAEIGLTSTWTLEDFKVAIAKDISSPPISDTNLKFV
FEELLERAREREEKEAKRRKRLADEFYELLHTSKEITASSKWEDCKSIFGDRIMGEESFL
LEIFDKFSSELKEKAKEKERKRQEDKARKEKERKDREKKKEKHRRDKDRGDKSRKERERT
KKDGTDSDKADTYSFEEIKRLGSDRDKKHRKRHMSSFDDNENEKDHSRNSYRHDNDHKKS
KQVDQHVWSSEVNSEGQHKKQKRDHRSGSHRDGDSEDHKDGEFGEDGEVR
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atggctaataattctcacttcactggcatgcagcctcctataccgcctttggctggtcct
ccaggtcctcatcaaggtgctattccatccatgtcgctgcagcagttccagcctatgctt
ccaccccagcaggcacaaccatatgtttccgggccatctcaacaatttcagccacttgga
catacaaatgttgcaatgcctcctcaaccttcacaaatccaatttcctcaaccaatgcaa
caggttgctggtagacctgtagtaggaggacatatcatgcctcaaggaccacctactccc
catgattttcagcgaaataggcctgtcactcctgttcaagcaccacttcagccaaatctt
ccaatgtcaaataaccacatgcctggtgcaggtggcccaagtttgccattatcttcttca
tataatcaggtaaatgcagattcttccagctcccagtatcagatgcagacacatgatcat
agttttccgtcagggggacaaccctggatgtcaacaagtaatcataatgtgaactctgtg
acaaatatgcagaagactggggaactagcagcccacttggctgttccagaagctgtttac
ggggttgactctgttgagactgctctgtcagattggattgagcatgcttctcgaaagggg
aagaaatattattataatcgaaggacaagaatctctagctgggagaaacctctagagctg
atgacagatatggagagggcggatgcatcaactgactggagagaatttacaagtcctcag
ggaaaaaagtattactacaacaaggttactagaaagtcaaaatggaaaatgcctgatgaa
gtcaagttggctcgtcagggtatgaaagtggatttagtcaagggattgggaaaagaaagg
gacagtatttcacacgcttctgattttggatccatttctggtgtgaaaacatcatccccc
agtgcaaatggttcactagtctcagcacaaggagctatgtcaagcccaattgctgtggca
ccagtttctaacttaccaactattgtggcttcagaatcatcaagtttatctggtaatatt
tcttccctgacgattggtgcagtcgaaatgcagaattctttggaacctgcctcgccagct
gttgctacttcagagaaaaatggaacagcagtaaccttggaaaattctgttgcaacacca
gtgactagttctgagtttccttcagctcaggactcaatagtgtatgaagatggagtttct
ctggaaaatacggaggaagttaagaaagatgctacgatatctgaaacaggcagtgttact
ccatcagaagagaaaacagttgagccgggaccattagtttatgagagcaaagcggaggca
aagagtgcattcaaaattcttctagagtctgcaaatattgggtctgactggacgtgggat
caggcaatgagagcaataatcaatgaccggagatatggtgctctaaaatctcttggtgag
cggaagcaagcttttaatgagtatctgagccataagaaaaaactggaagctgaagagaga
cgtgttaaacagaagaaagctcgggaagatttcaggataatgttagaagagtgcaaggag
ctggcaccatctacaagatggagtaaggcaatctccatattcgaacatgatgaacgtttt
aaagctgttgaacgagcaaaagatcgtgaggacctttttgaagattatatggagaaactt
gagaaaaaggagcgtgcaagggcattggaggagcagaagcgcaacagagtggagtattta
gaatttttaaaatcctgtgactttattaaggccagcagccagtggcggaaagttcaggac
cgcttagaagatgatgaaagatgctcttgccttgagaaaattgaccgtttggagattttc
caggaatatatacgtgatttagagagggaagaggaggagcacaggaaactgcggatggat
gaattgaggaaagcagaacgtaaaaatcgtgatgagttccgaaaactgatggaagagcat
cttgctgcgggaatacttaatgcaaaaactaactggcgtgattattgcatcaaggtcaaa
gatttacctgcatatcaggctgtctcatcaaatacctcagggccaacagcaaaagactta
tttcaagatgtttttgatgagctggagaaacagtatcttgatgacaagtcacgcattaga
gatgcagttaggatggctgagataggactgacatcaacctggacgcttgaagattttaag
gttgcaattgcaaaggatattagctctccaccgatatcagataccaacttaaagtttgtc
tttgaagagttactggaaagggccagggagagagaagaaaaagaagctaaaagacgtaaa
cgtctagcagatgaattctatgaacttctgcatacatcaaaggaaattactgcatcatca
aaatgggaggactgcaaatccatcttcggagatagaataatgggcgaagagagctttctt
ctggaaatatttgacaaattcagtagtgaactaaaagaaaaggcaaaagagaaggagcgg
aagcggcaagaggataaggcaagaaaagagaaggaaaggaaagatagagaaaagaagaag
gaaaagcatagaagggataaagacagaggggataaaagcaggaaagagagggaaagaacc
aagaaagatggcacagacagcgacaaggctgatacatacagtttcgaggagatcaaaaga
ttaggaagtgacagagataagaaacaccgcaagcggcatatgagttcctttgatgacaat
gaaaatgagaaagatcattcaagaaattcttacagacatgataatgatcataagaagtca
aaacaggtggaccagcacgtgtggagttctgaagttaattccgagggccagcataagaaa
caaaagcgagatcataggagtggttctcatagggatggtgacagtgaggatcataaagat
ggggaatttggtgaggatggagaagttcggtag
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