Nicotiana tomentosiformis: 104099860
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Entry
104099860 CDS
T05025
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03020
RNA polymerase
nto03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104099860
09124 Replication and repair
03420 Nucleotide excision repair
104099860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nto03021
]
104099860
03400 DNA repair and recombination proteins [BR:
nto03400
]
104099860
Enzymes [BR:
nto01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104099860
Transcription machinery [BR:
nto03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
104099860
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
104099860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
104099860
NCBI-ProteinID:
XP_009605280
LinkDB
All DBs
Position
2:74449164..74457125
Genome browser
AA seq
1191 aa
AA seq
DB search
MDTEEEYEQQYNNDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
SADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLT
YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
ECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPST
MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQ
MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGIGEY
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
AYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVN
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDLV
AKGYIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
RASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTS
LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP
WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH
KCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE
GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE
CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKQAKDQKKKGA
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggatacggaagaagaatatgagcaacaatacaataatgatgatgatgaagaggaaata
acccaagaggatgcttgggctgtcatcagtgcttactttgaagaaaaggggcttgtccga
cagcaactggattcatttgatgagtttattcagaacactatgcaagaaattgtggatgaa
tctgctgatattgagatccgacccgaatcccagcataaccccggtcaccaatctgacttt
gctgagacaatatacaaaatcaactttggtcagatttatttgagtaagccaatgatgaca
gagtcagatggcgaaactgctaccttgtttccaaaggctgcaaggttgaggaatctgaca
tactctgcaccactgtatgtggatgttacaaagagagtcatcaagaaagggcatgatggt
gaagaagttactgaaactcaggacttcacaaaagtcttcattggaaaggttcctataatg
cttcggtcaagttactgcacattatatcaaaattcagagaaagatctaacagagcttgga
gaatgtccattagatcaaggtgggtacttcattatcaatggaagtgaaaaggtcctaatt
gctcaggagaagatgagcaccaatcatgtgtatgtatttaagaagaggcaacccaacaag
tatgcgttcgttgcggaagtcaggtcaatggcagaatctcaaaaccgcccgccgagtact
atgtttgtgcggatgctctcaagaactagcgcgaaagggggttcctcgggccaatacatt
cgggcgacacttccatatatccggacagagattcctatcattatcgtgtttcgagctcta
ggttttgtggctgataaggatatattggaacatatttgttatgatttcaatgatactcaa
atgatggagttgttgcgtccgtctttggaagaagcttttgttatacaaaaccaacaggtt
gctcttgactacatcgggaagagaggggctacagttggtgttacaagggaaaagaggata
aagtatgccaaagagattcttcagaaagaaatgcttcctcatgttgggattggagagtat
tgtgaaacaaagaaagcttattattttgggtatatcatccaccggcttctgttgtgtgca
cttggccgaagggctgaggatgatagggatcactatggaaataagagactggatcttgct
ggtcctttgcttggtggcctgtttcgaatgctttttagaaagttgacaagggatgttaga
gcctatgttcagaagtgtgttgacaatggaaaagatgtaaacctacaatttgcaatcaaa
gctaaaaccattaccagtgggctgaaatactctcttgctactggaaactgggggcaagct
aatgcagcgggtacaagagctggtgtttcacaggtgttgaatcgtctgacttatgcttct
actttgtctcacttgcgaaggttgaactcccctataggacgagaagggaaactggccaaa
ccaaggcaattgcataattcacaatggggaatgatgtgtcctgcagaaacaccagaaggt
caagcatgtgggctggtgaagaatctagccttaatggtttatataacagttggttcagcg
gcatatccaattctggagtttttggaagagtggggtactgagaactttgaggaaatttct
cctgccgttattccacaggctacaaagatctttgtcaatggtacctgggtgggaattcat
cgcgatcctgacatgttggtgagaacactcagacgacttaggagaagggttgatgtcaat
actgaggtcggggtagttcgtgatatccgtttgaaagaacttcgaatttataccgactat
gggaggtgcagtcgtccattatttattgtggaaaagcaaaggctgctgatcaagaagaag
gatattcaaacattgcaacaacgggaatcacctgaagagggtggctggcatgatctggtg
gctaagggatacatcgagtacattgacactgaagaagaagaaacaacgatgattagcatg
actataaatgatcttgtgcaagcacgccttaatcctgaggaagcttattctgatacctat
acccattgtgagattcacccgtcactaatattgggtgtctgtgcatcaattattccgttt
cctgatcataatcagtctccccgtaatacttatcagtcagctatgggtaagcaagccatg
gggatttatgttaccaactaccaatttcggatggacacattggcctatgtgctttattat
cctcagaagcctcttgtcacaacacgggccatggaacacttgcatttcaggcaactgcct
gcgggcatcaatgcaattgttgccatttcctgctactctggatacaatcaggaggattct
gtcattatgaatcagtcatcgattgatcgtggatttttccgatcgctatttttccgctca
tacagggatgaggaaaagaagatggggacattggtcaaggaggactttggacgtcctgat
agagcttctactatgggtatgcggcatggttcttatgataagttggatgatgatggtctt
gcccctccgggaactagagtttctggtgaggatgtaatcattgggaagacaactcccatt
tctcaagatgatgcacaagggcaagcctctcgctatacaaggaaagatcacagtaccagt
ctccgccatagtgaaactggaatggtagatcaggttctattaacaacaaatgctgacggg
ctcagatttgttaaagtaagggttagatcagtccgcattcctcaaattggggacaagttt
agcagtaggcatggtcagaagggaacagttggcatgacgtatacacaagaagatatgcca
tggactgtggaaggcattactcctgatatcattgtgaatcctcatgctattccttctcga
atgactatcggtcagctgattgagtgtattatgggaaaggttgccgcacacatgggaaaa
gaaggtgatgccactccctttacagatgttactgtggataacatcagcaaagctttgcat
aaatgtggataccagatgcgtggttttgagaccatgtacaatggtcacactgggcggcgg
cttagtgcaatgatattccttggtcccacgtactaccagagactgaagcacatggttgat
gacaagattcattctagaggcagaggccctgtgcaaatcctcacaaggcagcctgcggaa
ggtcggtcacgtgatggtggtcttcgtttcggggaaatggagcgagattgtatgattgct
cacggtgctgctcattttctcaaagagcggttatttgaccaaagtgatgcatatagagtt
catgtttgtgagcggtgtgggctgattgctattgcaaacctcaagaagaattctttcgaa
tgcagaggctgcaagaacaagactgatattgtccaggtccacattccatatgcatgcaag
ttgcttttccaggagctaatggctatggctatagctccaagaatgcttacaaaggatgtc
aaacaagccaaagatcaaaagaaaaaaggagcttga
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