Nicotiana tomentosiformis: 104100008
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Entry
104100008 CDS
T05025
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104100008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104100008
04121 Ubiquitin system [BR:
nto04121
]
104100008
03036 Chromosome and associated proteins [BR:
nto03036
]
104100008
03400 DNA repair and recombination proteins [BR:
nto03400
]
104100008
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
104100008
Ubiquitin system [BR:
nto04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
104100008
Chromosome and associated proteins [BR:
nto03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
104100008
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
104100008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_2
BRCT
zf-HC5HC2H
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-HC5HC2H_2
RTT107_BRCT_5
zf-C3HC4_3
zf-RING_6
zf-C3HC4_4
zf-RING_5
PHD_NSD
zf-RING_10
zf-rbx1
PTCB-BRCT
zf-UDP
Motif
Other DBs
NCBI-GeneID:
104100008
NCBI-ProteinID:
XP_009605459
LinkDB
All DBs
Position
12:26154019..26160674
Genome browser
AA seq
993 aa
AA seq
DB search
MADISHLEKMGRELKCPICLSLLNSAVSLTCNHVFCNLCIQTTMKSGSNCPVCKVPFHRR
EIRPALHMDNLVNIYKNMEVASGVNIFVTQTNSTSILPGEENQSNGKQSCGFQDEGKIIT
EVPATDNQKRKRGKGSKKSSECNKKNSGSNLIRPSFPTKKRVQVPQYPPSETPPPTKLVG
GNGKSVTNEAQKPLLIEKDRSILNKKGEPILSPFFWLREEEDVERSSQQTDGDIIMDTPP
LIPCFSDIKDMDDEVHCEISPKSGTHNAANGVDLFDSEMFDWTQRACSPELCSSPYKTKI
KDTECAAAHEKTRAPSLKRHSVESATQDRTAVVNEEGTDKEQLKSHSLFPLENEITGTKG
VVCKSSKNKALRCNKKKQGKKIIGEVSEVHNNLQKAAEQTMKNNQEDAYALNSKKKDLKN
KKKGSSATNVIGSTIEDSSTSCRAKRLRKSSQSKSFDLSTLGDQEKHSEGSFETLDLKTC
HKWNQGSMGEQNKIRSRPKSRQRTAKDNITQTQDEVLHLESANRLLPMDNDGEATPSGTL
MKKRELECDDKLHGKKKVKFSEDEQLADKENITLEKIQKRVHKSLETEKSVLDVNGLVLR
KCEASRNKIQCAFCRSAEESEVSGVMISYLNGKPVKEDVNGVSGVIHVHKHCAEWAPNVY
FEEDDAVNLEAELKRSRRITCFFCGVKGAALGCYETSCRKSFHVPCAKLTPECRWDYDNF
VMLCPLHANSKLPCEAPGKQSRIKESIKRSSNIHQSKVSATPDNTATSQWKSQKKNKSLV
LCSSALTADEKGLVSSLKRLSGVTVVKNWDLSVTHVIASTDEKGTCRRTLKYLMGVLVGK
WILSIDWITACLEATEFVDEQQYEIKLDAHGIADGPKLGRLRILNKQPKLFNGYEFFFVG
DFSPSYKSYLHDLVIAAGGIVLNRKPVTVNQEVPSPGCLPPFVIYSHEQLDKSEVTEKKR
SDAEALASSTGAVVASSTWILNCIAGSKLLELE
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atggcagatatttcacatcttgaaaaaatgggaagagagctcaagtgtcccatctgcttg
agtctgttgaattcggctgtttcacttacatgcaatcatgtattttgcaatttatgtatt
cagactactatgaaatcagggtccaattgtccagtgtgcaaagttccttttcatcgcaga
gaaatccgacctgctctgcacatggataatttggtgaacatctataagaacatggaagtt
gcttcaggagtcaatatatttgttactcaaaccaattctacatccatattaccaggtgaa
gaaaaccaatctaatggcaaacaatcttgtggattccaagatgaaggtaaaattataaca
gaggttccagctacagataatcagaaaagaaaaagagggaaaggatcaaaaaaatcttca
gagtgcaacaaaaagaattctggatcaaatcttattagaccctcctttccaacaaagaag
agagtgcaggtgccacaatatccaccttcagagactccgccacctacaaagttggttggt
gggaatggtaaatccgtcaccaatgaagctcagaaacctttgctgattgagaaagacagg
tccattctaaacaaaaaaggagaaccaatactatctccattcttctggctgagagaagaa
gaggatgtagaaaggtcaagtcagcaaacagatggagacattatcatggatacacctcca
cttattccatgcttcagtgatataaaggacatggatgatgaggtccactgtgaaatatct
ccaaaaagtggaactcataatgcagcaaatggagtagatctttttgacagtgagatgttc
gactggacacagagagcttgctctcctgaactttgttcgagcccctacaagacgaagatt
aaagatactgagtgtgctgcagctcatgagaagactcgagcaccctcactaaaaaggcat
agtgtggaatcagcaactcaggacagaacagctgtggtaaatgaagagggtactgataaa
gaacaactgaagtcgcactctttatttcctcttgaaaatgaaatcactggtaccaaaggt
gtcgtttgcaagtctagcaagaataaggcacttagatgcaataagaagaaacaaggcaag
aaaataattggtgaagtatcagaagtccataataacttacaaaaagcagctgaacaaact
atgaagaacaatcaggaagatgcctatgcacttaactcaaagaagaaagatttgaaaaac
aagaaaaagggtagttccgctacaaatgtcatagggtcaacaatagaagacagttccact
tcatgtcgtgctaaaagactccgcaagagcagtcagtccaagtcctttgatttgtctact
cttggggatcaggaaaaacacagtgaaggaagctttgagacacttgacttgaagacatgt
cataaatggaaccagggatctatgggtgaacaaaataaaattcgttctagaccaaagagc
agacagagaactgctaaagataacattacacaaacccaagatgaagttttgcatttggaa
tcagcaaatagattgcttcccatggataatgatggggaagctactccttctggtacacta
atgaagaaacgtgagcttgagtgtgatgacaagcttcatggtaagaaaaaggtgaagttt
tctgaagatgagcagcttgctgacaaggaaaatattacacttgaaaagattcagaagaga
gtgcataaatcattggaaacagagaaatctgttttggacgtgaatggattggttttgcgg
aagtgtgaggcaagccgcaacaagatccagtgtgctttctgccgttcagcagaggaatct
gaggtttcaggagtcatgataagctaccttaatggaaagcctgtcaaagaagatgtcaat
ggagtatctggtgttatacatgtgcataagcattgtgcagaatgggcccctaatgtatat
tttgaagaagatgatgcggtcaaccttgaagctgagctgaagaggagtcggaggattact
tgttttttctgtggagtaaaaggggcagctcttgggtgttatgagacgagttgtcgtaaa
agctttcatgttccttgtgccaagctgacgccagagtgtcgatgggattatgataacttt
gttatgttatgccctttgcatgccaactctaagctgccatgcgaggcccctggaaaacag
tccaggattaaagaaagtatcaaaagaagttctaatatccaccagtctaaagtctcagca
acacctgataatactgctacttcgcagtggaagtctcagaagaagaataagagcttggtg
ctctgttcttcagctctaactgctgatgaaaaaggtcttgtttcttcattaaagaggttg
tctggagtgacagtagtcaagaactgggacctaagtgtcacccatgttattgcttctaca
gatgagaaagggacatgccgaagaactctcaaatacttgatgggtgtcttggttgggaaa
tggatattgagcattgactggattactgcttgcttggaagccacagaatttgtcgatgag
cagcaatacgagattaaactagatgctcacggcattgcggatggccctaagcttggaaga
ttgcgaatattaaacaagcaacctaagcttttcaatggatacgagtttttttttgtgggc
gacttttcaccttcctacaagagctatctacatgaccttgttattgctgctggaggaatt
gtcctcaacaggaagcctgtaacagtgaatcaggaagttccttcacctggatgccttcca
ccttttgtaatttatagtcacgagcaacttgataagtctgaagtaacagaaaaaaagcga
tctgatgcagaagctttggctagttccaccggagctgtagtggccagcagcacttggatt
ctgaactgcattgctggctccaagttgctggagctggaatag
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