Nicotiana tomentosiformis: 104100265
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Entry
104100265 CDS
T05025
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto04120
Ubiquitin mediated proteolysis
nto04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
104100265
04120 Ubiquitin mediated proteolysis
104100265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nto04121
]
104100265
Enzymes [BR:
nto01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104100265
Ubiquitin system [BR:
nto04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104100265
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_11
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
104100265
NCBI-ProteinID:
XP_009605761
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All DBs
Position
3:complement(96389832..96397216)
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AA seq
528 aa
AA seq
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MVRLQTYAGLSIIATLAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLALMCILWQL
TKKIFLGSLREAEVERLNEQSWRELMEILFAITIFRQDFSVMFLAMVTALLLIKGLHWLA
QKRVEYIETTPTVTTLSHVRIVSFLGFLLLIDSLFLYDSVSYLIQTRQASVSLFFAFEYM
ILVTTTVSTFVKYVFYISDMLMEGQWERKPVYTFYLELIRDLLHLSLYLCFFMVIFMNYG
VPLHLIRELYETFRNFKIRVADYIRYRRITSNMNDRFPDATPEELDVSDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPAENGTNVVGSRPDAQQGPGSSGAST
SQSAQANTVANNNVSQHQARLQAAAAAAAVYQKSFVYPSVPTLAWSPGYAPVPPYYCPTG
SSVNVHPDGERASNEQSPQHQLANMPFAQYPQCGFLPFQYPGANNLSIPNAQLEAHKILL
QQQIEVLQNQLKLLENPNTQKPADALGISDSKGKTISSENSQGQSEGA
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggtgaggttacaaacttatgcggggcttagcataatagctacactggccgttatttat
catgcgtttaatagcagaggccaattttacccagcaatggtttatttatcaacgtccaag
atcagtctggttcttcttcttaacatgggtcttgccctcatgtgcattttgtggcagctg
actaagaaaatcttccttggttctcttcgagaggctgaggtggagaggctgaacgagcag
tcttggagggaactcatggaaatactttttgccatcacaattttccggcaagacttctca
gttatgtttcttgcaatggtaactgcactcttgcttatcaagggcttgcactggttggct
caaaagagggttgagtatattgaaacaaccccaactgttactacgttgtcccacgttcgc
atagtctccttcttgggctttctcctcctcatagacagtctcttcttgtacgactctgtc
agctatttgattcagacaagacaggcatctgtttctctattctttgcattcgagtacatg
atacttgtgacaacaactgtctcaacttttgtaaaatatgtcttctacataagcgacatg
cttatggaaggacaatgggagaggaagcctgtctatactttctacttagaacttatccga
gacttgctccacttgtctctgtacttgtgcttcttcatggtgattttcatgaactatggc
gtgcccctgcatttgattcgggagctttatgagacattccgcaacttcaagattcgagtt
gccgattacatacgctatcggaggatcacttcaaatatgaatgaccgttttccagatgct
acaccagaagagctcgatgtaagtgatgctacctgcatcatatgtcgtgaggagatgacc
actgctaagaaacttatttgtgggcatctgtttcatgtacattgcctccgttcatggcta
gagcgtcaacacacctgtcctacttgcagagcccttgttgtgccagctgaaaatgggacg
aatgtggtaggatcacgaccagatgctcaacaaggccctggatcaagtggtgcaagtaca
tctcagagtgcgcaggcaaataccgtggcaaataataatgttagccaacaccaggctaga
ctccaagctgcagcagcagcagcagcagtttatcagaagtcctttgtttacccttctgta
ccaacgctagcgtggtctcctggatatgctccagttcctccgtactattgtccaacaggc
agttctgtcaatgtgcacccagatggggagcgggcatcgaatgaacagtcaccgcaacat
cagttagcaaatatgccctttgctcaatatccacaatgtggtttcctcccttttcagtat
cctggtgctaacaaccttagtattccaaatgctcaacttgaggcccataagatactttta
cagcaacaaattgaggttctgcaaaaccagctcaagcttttagagaatccaaacacacag
aaaccagcagatgctttaggaatttctgatagtaagggaaaaacaatttcgtcagagaac
tcccaaggacaaagcgaaggtgcataa
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