Nicotiana tomentosiformis: 104100661
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Entry
104100661 CDS
T05025
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104100661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nto03041
]
104100661
Spliceosome [BR:
nto03041
]
Complex A
U1 snRNP components
U1 related factors
104100661
Complex B
104100661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
TetR_C_11
Motif
Other DBs
NCBI-GeneID:
104100661
NCBI-ProteinID:
XP_009606230
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All DBs
Position
11:49601610..49633295
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AA seq
1050 aa
AA seq
DB search
MASNPPPSGPQPLWPPSVGSTPPQGFGSSFPMQFRPAVSTQQGQPFASSISASPQYRPIG
QTPNAGMPPGHGQIPQFSQPMQQFPPRPSQPGHGILSSQAIQMPFIQSSMPQPQQVIPPL
NSHMPGVSGAGNPFSSSYTFAPPPFAQALSGLNMPSQVQSSSQMHVPPFPSGGQPWLSSG
SQTTPVAAPTLLTSQQLSAIAPSVPAGTASQQNASDWQEYEAADGRRYYYNKITKQSSWE
KPLELMTTLERADASTVWKEFTTADGRKYYYNKETKQSKWTIPEELKLARELAEKSADQV
VQTGASTISGVQVTAAVTSTEQPSAVTPVSSTPSSTVSGVASSPVPVTSAVSDHASPLVV
SGSSAIPAVTPAMPSSSGVSSPAVSGSTGSATLANASQKQMSGFENLSPQVASSLSGASI
QDIEEAKKGMAVAGKVNVVPAEEKTTEEEPFLYATKQEAKNAFKALLEFANVESDWTWEQ
TMRVIINDKRYGALKTLGERKQAFNEYLMQRKKQEAEERRHRQRKAKEEFTKMLEESKEL
ISSTRWSKAVTMFEDDERFKAVEREADREDLFRNYLVDLQKKERAKAQEEYRHNRLEYRQ
FLETCGFIKVDTQWRKVQDLLEDDERCSRLEKIDRLDIFQEYIRDLEKEDEEQRKLQKEQ
LRRTERKNRDAFRKMMEEQIAAGTLTAKTSWRDYCQMVKEYVAYQAVASNTSGSTPKDLF
EDVVEELEKQYHEDKIRVKDVVKSEKITISSTWTFEDFKAAILEGIGSPSIHDVNLQLIF
EDIIERAKEKEEKESKKRQRLAKDFTDKLSTIKEITASSSWEECKELVEDSSEFRAIGEE
TISRAVFEEYVAWLQEKAKEKERRREEEKAKKEKEKEEKEKRKDKERREKEREKEKEREK
EKERGKERSTKDEADSESMDVTDNYEPKEERKREKDKERKHRKRHHISNDEVTSDKDEKV
EPERDKERKHRKRHHSSNDEVASDKDEKEESKRSRRHSSDRKKSKKLAHSPESDGESRHK
RHRRDHRDGSRRNGGYEELEDGELGEDGES
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggccagtaatcctccgccatctggtccacagcctctttggcctccttcagttggatcc
acaccacctcaaggttttggttcatcatttcccatgcaatttcgacctgctgtatcaaca
cagcaaggccagccctttgcttcatcaatttcagcctctccacaatatcgccctattgga
caaacaccaaatgctggaatgcctcctggtcatggtcaaataccccagttttctcaacca
atgcagcagtttcccccaaggcccagccagccgggccatggtatactttcatctcaggca
attcagatgccatttatccaatcaagtatgccacagcctcaacaagtcattccgcctttg
aatagtcacatgcctggtgttagtggtgctggaaatccattctcatcatcatatacgttt
gcaccacctccttttgcccaggcactaagtggcctgaacatgccctctcaggttcaatcg
tcatcccaaatgcatgttcctcctttcccttcggggggacaaccttggctgtcatctgga
agtcaaaccacaccagtggctgcccctactttactgaccagtcagcaattgtcagctata
gctccatccgttccggcgggcacagcttcacagcagaatgcgtctgactggcaagagtat
gaagctgctgatgggagacgatattattacaataaaattacaaagcaatcaagctgggag
aagcctttggagctgatgacaactttagagagagctgatgcgtcgacggtatggaaagaa
ttcacaactgcagatggtcgaaagtattactacaacaaagaaacaaagcagtctaagtgg
acaatacctgaggaactaaagttggctcgtgaactggcggaaaaatctgctgatcaagta
gttcagaccggagcaagcacaatttctggtgtgcaagtcactgcagctgtaacttcaaca
gaacaaccatctgctgtcaccccggttagctccaccccttcttcaacggtttctggagta
gcttcaagccctgttccagttacatctgctgtttctgatcatgcttctcctctggtggtt
tctggatcatcagccattccggctgtgacccctgcgatgccaagttcatctggtgtctct
tcacctgctgtttcagggagtacaggatctgctactctggctaatgccagtcaaaaacaa
atgagtggctttgaaaatttatctcctcaagttgctagttctttaagtggagcttccatt
caggatattgaggaggcaaagaagggcatggcagttgctgggaaggttaatgtggtacct
gcagaggagaaaacaacagaagaagaaccttttctatatgcgaccaaacaggaggctaaa
aatgcgttcaaagcgctgctagagtttgctaatgttgaatctgattggacatgggagcag
acaatgcgagtaataatcaacgataagcgatatggcgctctgaaaactcttggtgagcgg
aaacaggcattcaatgagtacttgatgcaaaggaagaaacaggaggctgaggagaggcgc
catagacaaagaaaggcaaaagaagaattcacaaagatgttagaggagtccaaggaactc
atttcttctactagatggagtaaggcagtaaccatgtttgaggatgatgaacggttcaag
gccgttgaacgagaggctgatcgtgaagatctcttcaggaactacttggtggatcttcag
aaaaaggagagggcaaaggctcaagaggagtatcgacataatagattggagtacagacaa
tttttggagacttgtggctttatcaaggtagatacccagtggcgcaaagtccaagatctt
ctggaagatgatgaaagatgttcgcgccttgaaaaaattgatcgtttagatattttccag
gaatatatccgtgacctggagaaggaggacgaagaacagagaaaattgcaaaaggaacaa
ctgaggcgcacggagcgtaagaaccgggatgcatttcgaaagatgatggaggagcaaatc
gctgcaggcacgcttactgcgaaaacatcttggcgtgattattgtcagatggttaaggag
tatgtggcttatcaggctgttgcatcaaacacttctggttcgacaccaaaggatttgttt
gaagatgtcgttgaagagttggaaaaacagtaccatgaagacaagattcgagtaaaagat
gtagttaagtcagaaaagatcacgatctcgtcaacatggacattcgaagactttaaagct
gctattttggaaggaattggttccccatccattcatgatgttaatctacagctcattttt
gaggatataattgagagagcaaaggagaaggaagaaaaagaaagtaaaaagcgtcaaagg
cttgcaaaagatttcactgataagcttagtaccattaaggaaataactgcttcctctagt
tgggaggagtgcaaagaacttgtggaggacagctcagagttcagagctattggtgaagag
acaatctcaagggcagtctttgaggaatatgttgcatggttgcaggagaaggcaaaggaa
aaagaacgcagacgagaggaggaaaaggccaaaaaggagaaagaaaaagaggagaaagag
aagagaaaggataaggagagaagggaaaaagagagagagaaggaaaaagagcgtgagaag
gaaaaagaaaggggaaaagaacgatcaacgaaagatgaggcagatagcgagagtatggat
gtaacagataactatgagcccaaagaagagagaaaaagagaaaaagacaaagagaggaaa
catcggaagcgacaccatatctctaacgatgaggtgacttctgacaaggatgagaaagtg
gaacctgaaagagacaaggaaaggaaacaccggaagcgacaccatagctctaacgatgag
gtggcatctgacaaggacgagaaagaggaatctaaaaggtcccgccgacatagcagtgat
cgtaaaaagtcaaagaagcttgcacactcacctgaatccgatggtgaaagtcggcataaa
agacacagaagagatcatagggatggatcacgtcgaaatggtggttatgaagagttagaa
gatggggagcttggtgaagatggagaaagttga
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