Nicotiana tomentosiformis: 104100747
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Entry
104100747 CDS
T05025
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104100747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104100747
03041 Spliceosome [BR:
nto03041
]
104100747
03009 Ribosome biogenesis [BR:
nto03009
]
104100747
03016 Transfer RNA biogenesis [BR:
nto03016
]
104100747
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104100747
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104100747
Spliceosome [BR:
nto03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104100747
Complex C
U4/U6.U5 tri-SnRNP related factors
104100747
Ribosome biogenesis [BR:
nto03009
]
Eukaryotic type
Pre-60S particles
Helicases
104100747
Transfer RNA biogenesis [BR:
nto03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104100747
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
104100747
NCBI-ProteinID:
XP_009606352
LinkDB
All DBs
Position
1:108583235..108595635
Genome browser
AA seq
991 aa
AA seq
DB search
MGCFKRKSQEFCNKGNIISPPSKQLKQNGSVGVGEEVVCVHDVSYPEGYVPSASSTLPQV
DSTPAKEFPFTLDPFQSEAIHCLNNGESVMVSAHTSAGKTIVALYAIAMSLKNNQRVVYT
SPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKISDVIGEVAW
VIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVY
TNYRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKALNAIVPANEWDKKRENGKYQKG
LVFCKSGEDSDIFKMVKMIIQRQYDPAICFSFSKRECEFLAMQMAKMDLNNDAEKVNIET
IFWSAMDMLSDDDKKLPQVLNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFAT
ETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDEK
LEPPTAKSMLKGSADALQSAFHLSYNMLLNQMRREGDDPENLLRNSFYQFQADRAILDLE
KQAKILKEERDSIVIEEGDSVERYLNLIEQYKSLKRDVHKIVFSPKYCLPFLQPGRLVCI
ECTEVGVDVPTFSIMEEFTWGVVINFERAKGLSEDDVNKKPEDANYTVDVLTRCIMQKDD
VGRKTIKIVPLKNAGEPAVVSLPLSQIDSLSSVRLVIPKDLLPSEARENTLKKVSEVLNR
FSREGMPLLHPEDDMKVQSNSYRKASSRIEALESLFEECGIATSPLIKEKLKVLHKKKEL
TGKIKSIKRAMRTSTTLAFKDEYKARKRVLRRLGYIKKESAKVKIACEISSADELTLTEL
MLNGTFGKIEVEELVSLLSCFVWQEKLQDTQKPREELELLFAQLQDIARKVAKVQLDSKV
QIDVENFVSSFRPDIMEAVYAWAGGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIEAA
KAVGDVGLEAKFKKAVAKIKRDIVFAASLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgggttgttttaagaggaagtcgcaagaattctgcaataagggtaacattatatcacct
ccaagtaaacaactgaaacaaaatggttcagtgggtgtgggtgaggaagtggtatgtgtg
catgatgtatcatacccggaaggctatgtcccctctgcttcttcaactttgcctcaagta
gactcaacacctgctaaggagttcccttttactctcgacccttttcaatctgaagctatc
cattgccttaataatggtgaatccgtcatggtatcagcacatacgtcagcgggaaagaca
attgttgcgttgtatgccattgccatgtcgctgaagaataaccagcgagtagtatatact
tcaccaattaaggctcttagtaatcagaagtatagagaattcaaagaggagttttcagat
gtgggtttgatgacaggagatgtcaccattgatccaaatgcttcttgcttggtaatgact
acagaaatctggcgtagtatgcagtataaaatatcagatgttataggggaggtggcttgg
gttatttttgatgaggtacactacatgcgtgatcgagaaagaggtgtggtttgggaggaa
agcattgttatggcccctaaaaattctcgctttgtgttcctctcagcgacggtgcccaat
gctaaagagtttgctgattgggttgcaaaggtccatcagcaaccatgccacattgtttat
acgaactatcgacccactccacttcagcattatatatttccttctggtggtgatgggtta
tacttggtggttgatgaaaaagggaagtttcgtgaggatagttttcagaaagctttgaat
gctattgttccggccaatgaatgggataagaaaagagagaatggcaagtatcagaagggt
ctggttttttgcaaatctggcgaggatagtgacatattcaagatggttaaaatgattatt
cagcggcaatatgatcctgcaatatgtttcagcttcagcaaaagagaatgtgaatttcta
gcaatgcaaatggcaaaaatggatcttaacaatgacgctgagaaggtgaatattgaaact
attttctggagtgctatggacatgttgtcggatgatgataaaaaactgccccaggttttg
aatatgcttcccctattgaaacgtggaattggtgtgcatcactctggtttgcttcctata
ctgaaagaagtgattgaaatcctgttccaagaaggattcatcaagtgtttgtttgccaca
gagaccttcagtatagggttgaacatgcctgcaaaaactgttgtctttacaaatgttcgc
aaatttgatggagacaagtttagatggatatccagtggtgagtatattcagatgagtggt
cgtgctggtcgtcggggaattgatgaacgtgggatctgcatccttatggttgatgagaag
cttgaacctcctacagctaaatccatgctaaagggaagtgctgatgcattacaaagtgcc
ttccatttaagctataacatgcttttaaatcaaatgcggcgtgaaggtgatgatcccgaa
aatctgctccgtaactcattttatcaatttcaagcagatcgtgcaattcttgatcttgag
aaacaagcaaaaattcttaaagaggagagagactcaattgtgattgaagaaggagacagc
gttgagagatatttgaatctgatagaacaatataagagcttgaagagggatgtacacaag
attgttttctccccaaaatattgcttacctttcttgcagcctggtaggcttgtatgcatt
gagtgtacggaggttggcgttgatgttccaaccttctccatcatggaagagttcacatgg
ggagtagtaattaattttgaaagggcgaaaggtctttctgaagatgatgtaaacaaaaaa
ccggaggatgcaaactatacagtagatgtacttacgagatgtataatgcagaaggatgat
gttggtagaaagacaattaaaattgttcccttgaagaatgctggggaaccagctgttgtt
tctcttcctttgtcccagattgatagtttgagcagtgtccgtcttgtgattccaaaggat
cttttaccttcggaagctcgagaaaatacactaaagaaggtttctgaagttctcaataga
ttttcaagagagggcatgcctctcttacacccggaagatgacatgaaggttcaaagtaac
tcgtacaggaaggcttcaagtaggatagaagccttggagagtctgtttgaagagtgcggg
atagcaacgtctccccttataaaagaaaagcttaaggttttgcataagaagaaagaactt
actggcaaaatcaaatcaattaagagagcaatgcgtacttcaactaccttggctttcaaa
gatgaatataaagcaaggaaaagagttctcaggagacttggatacataaaaaaggaaagt
gctaaagtgaagattgcctgtgaaataagcagtgcagatgagttgaccttgactgaattg
atgttgaatgggaccttcggcaaaattgaagtggaggagcttgtatctcttctctcttgt
tttgtgtggcaagaaaagcttcaggatacccaaaagccccgggaagagcttgagttgctc
tttgcacagttacaggatatagctcggaaggttgcaaaagttcagctcgacagcaaggtc
caaatagatgttgagaactttgtgagttcattccgacctgatatcatggaggctgtctat
gcctgggctggaggatctaagttttatgagattatggaaattactcaggtgtttgagggc
agtttaatcagggctatcaggagactggaggaagttcttcagcagctaatagaagctgcg
aaagccgttggggatgttgggcttgaggcaaaattcaaaaaggccgttgccaagatcaag
agggacattgtctttgcggcatctctgtatttgtag
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