Nicotiana tomentosiformis: 104100749
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Entry
104100749 CDS
T05025
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03013
Nucleocytoplasmic transport
nto03015
mRNA surveillance pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104100749
09122 Translation
03013 Nucleocytoplasmic transport
104100749
03015 mRNA surveillance pathway
104100749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104100749
03041 Spliceosome [BR:
nto03041
]
104100749
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104100749
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104100749
Spliceosome [BR:
nto03041
]
Complex C
Other components
EJC/TREX
104100749
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104100749
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
104100749
NCBI-ProteinID:
XP_009606356
LinkDB
All DBs
Position
2:168581695..168592118
Genome browser
AA seq
428 aa
AA seq
DB search
MGDSKENDAYEEELLDYEEDDEKAPDSISAKVSGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAAMV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRILA
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQTIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVS
RAAQLNKLLVECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagactcaaaggagaacgatgcttatgaggaggagcttctcgactacgaagaagat
gacgaaaaagcccctgattccatctccgctaaagttagcggcgagtccgccaagaagggt
tatgttggcattcacagttccggattcagagactttctgctaaagccagagctattgcgg
gctattgtggattcagggtttgagcatccgtctgaagtgcaacatgagtgtattccacaa
gcaatcctaggcatggatgttatttgtcaagctaaatctggaatgggcaaaactgctgtt
tttgttctttcaactctgcaacagattgaacctgttgctggtcaggttgctgccatggtt
ctatgtcacacaagggaattggcttatcagatctgtcatgaatttgagaggttcagcacg
tatttgcctgatatcaaggttgctgttttctatggtggtgtcaatatcaaacttcacaag
gagcttctgaagaatgaatgccctcatatagttgttggaactcctggaagaatacttgca
ttggctagagacaaggacctgtctttgaggaacgtgaggcattttatactggatgaatgc
gacaaaatgcttgaatcacttgacatgagacgagatgtgcagacaatcttcaagatgact
cctcatgacaagcaagtaatgatgttttcagcaacactcagcaaagagattcgccctgtt
tgcaagaaatttatgcaagatccaatggaaatttatgtagacgacgaggccaagttgacc
cttcatggacttgtacagcactacatcaaattgagcgaaacggagaagaaccggaagctg
aatgacctgctggatgctttggacttcaatcaagttgttatatttgtcaagagcgtgagc
agagcagcacagctgaacaagttgcttgttgagtgcaattttccatctatctgcatccac
tctggcatgactcaggaagagagattgactcgctacaagaatttcaaggaggggcacaag
agaattcttgttgcaactgatttggttggcaggggcattgacattgaaagggttaacatc
gttgttaactatgacatgccagattccgcagacacttatcttcacagagttggtagagct
ggtaggtttggaactaaaggtcttgccatcacatttgtgtcgtctgcatcagattctgat
gttcttaaccaggttcaggagaggttcgaagtggatataaaagagcttccggagcagatt
gatacttctacatacatgccatcatag
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