KEGG   Nicotiana tomentosiformis: 104101325
Entry
104101325         CDS       T05025                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
  KO
K14962  COMPASS component SWD2
Organism
nto  Nicotiana tomentosiformis
Pathway
nto03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:nto00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    104101325
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nto03019]
    104101325
   03036 Chromosome and associated proteins [BR:nto03036]
    104101325
Messenger RNA biogenesis [BR:nto03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     104101325
Chromosome and associated proteins [BR:nto03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     104101325
    COMPASS/SET1 complex (yeast)
     104101325
SSDB
Motif
Pfam: WD40_Prp19 WD40 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st ANAPC4_WD40 WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_SPT8 Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_Nup120_160 WD40_MABP1-WDR62_1st PQQ_3 NBCH_WD40 WD_LRWD1 Beta-prop_VPS8 DUF2963 Methyltransf_13
Other DBs
NCBI-GeneID: 104101325
NCBI-ProteinID: XP_009607057
LinkDB
Position
9:85155021..85165368
AA seq 332 aa
MTALSELNDDIVRSMTVASVFSDFGGQINSLDFHRKEDLLITASEDDSIRLFDIANGKLL
KTTYHKKHGADRICFTHHPHSVICSSIHNLDLHGESLRYLSMYDNRCLRYFKGHKERVVS
LCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPAVAYDQQGLVFAVAMEGGAVK
LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTSNSIYVLDAYGGEKRCGFN
LDPSPTAMEATFTPDGQYVVSGSGDGNLHAWNINTLNKVSSWDSHIGVPSCLKWAPRRVM
FVAASSVLTFWIPNHGGAGDAAGAQTEQVTLQ
NT seq 999 nt   +upstreamnt  +downstreamnt
atgacggcactatcggagctcaacgatgacattgttcgtagcatgaccgtagcatcagtc
ttctcagattttggcgggcagataaactcacttgattttcatcggaaagaagatttgctg
ataactgcaagtgaggatgactcaattcgactttttgacattgccaatgggaagttgctg
aagactacatatcataagaagcatggagctgatcgaatatgctttacccaccaccctcac
tctgttatatgctcttcaatacacaacttggatttgcatggagaatctttgcggtaccta
tccatgtatgataatcgatgccttcgttactttaagggacataaagagagggttgtatca
ctgtgtatgtctccagttaatgacagcttcatgtctggttctcttgaccatagtgtcaga
atctgggatcttcgtgtaaatgcctgccaggggattttgcgtctaagaggtaggcctgca
gttgcttatgaccaacaaggccttgtctttgcagtggcaatggaagggggtgccgtcaaa
ttgtttgattcaaggtcgtacgacaagggaccctttgataccttcctagttggtggggac
acagctgaggtttgtgacataaaattcagcaatgatggaaaatcaatgctcttaacaact
actagtaacagcatctatgtccttgacgcctatggaggagagaagcggtgtgggtttaat
ctggatccctctccgacagcaatggaggcaacctttacaccagatggccaatatgttgtt
tcaggttcaggagacggaaacttgcatgcgtggaacatcaacacactaaataaggtttct
agctgggatagccacataggcgtcccgtcctgcttgaaatgggcgccaagaagagtaatg
tttgttgctgcatcatcagttcttaccttttggatccctaatcatggaggtgctggtgat
gccgctggagcccagacagaacaagttactcttcaatga

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